ISMdi2
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium dichloromethanicum | Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1689 bp
Ends
IR Length : 25
IRL : GGTTCTTCCGCACTTTCGGTGCTGAGCGGTGGTTTGGGCGTTGAATCGCA
IRR : GGTTCTTCCGCACTTTCGGTGCTGAAGGCTTGGCGTCCGATCAAGCCTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTCCAATTCT | AATGTTCAACG | 0 |
DNA sequence
GGTTCTTCCGCACTTTCGGTGCTGAGCGGTGGTTTGGGCGTTGAATCGCATGGTGGCCCGAGGGCAGCGCGATGCCAATCTCGAACCCGTCGATGCCGTC
GGTCCCGGACGGCCTACACGTCGATGACCTGACGCTGGATGAAACGGGGTTGCTGATCACCGCCCGGACCACAGCGGCCCAGGCGTCCTGTCGGGTCTGC
GGGCGTGCTTCGGCGCGGGTGCACAGCCGGTATTGGCGGACGTTCAAGGACCTGCCCTGGCAGGACCGGTCGGTGACGTGGCGGGTGCAGGTCCGCCGCT
TCCGCTGCGGCCATTGCCCGGGGCGGATCTTCGCCGAACGCGTGCCGGGGCTCGGCACGCGCAAGTCGCGCCGCAGCGACCGGTTGGCTGAGGCGCAGAC
CGACATCGGCATGGTGCTGGGTGGTGAGGCCGGCGCAAGGTTGTCGCGGCGGCTGGCCATGCCTGTCAGTGGCGACACCGTCCTGCGCTTGATCCGTCGT
CGCGGGACCGTACCGTCTCCGCCGCCGCGGGTGGTCGGCATCGACGATTGGGCATGGCGGCGCGGCCGGTCCTACGGCACCATCGTGTGCGACCTGGAGC
GGCGGCGCGTCATCGACCTGTTGCCCGGCCGCTCGTCGGCACCGGTGCGGGATTGGCTCGCTGCCCATCCGAGCGTGACCGTGGTCAGCCGCGACCGCTC
GGGGCCCTATGCCGAGGCTGCGCGTACGGGAGCGCCGACGGCGACGCAGGTCGCGGATCGCTGGCACCTGCTCGTCAACGCATCCGAGGCGCTGCGCGGC
GCGGTCGAGCGACACCAGCTGGAGATCCGGAGCGTGGCCCACCGCGCCGTGAAGGATCCCCCTGCCTCCCTGGGCCTGAGGGAGACCGCAGCCAAGCCGG
AGGTGACAAGCCGACGACGTGATCGCTGTGAGGCGGCCCTGTGCCTCCACGGCGAAGGTCTGCCGACCAAGGAGATTGCTCGCCGTCTCGGCGCGTCCCG
CAACGCCGTGCGCCGCTGGGTGCGGGCAGGCCGGTTCGTGCCCTACCGCCGCGCACCGGGTTCAAGCCGGCTCGACCGCTATCTCCCCTTCGTCGAGGCC
CGCTGGCAGGAAGGCCAGCACAGCGCCACCGCGCTTTGCCAGGAGTTGCACGCACAAGGCTTCACGGGTGGCTACGACATCGTCCGGCGCTGGGCTGCGC
GTCGGAAGCGAGGGGCACCGGCTCGACCACCGTCCACTCGGATCCCCTCGACGCGCCGCATCACCCGGTGGCTCACGGGCGACCCAGCTGCACTGTCGCC
AGAGGATCGCGCCTTCACCGAAGCGCTCTGCAGCGCCGCGCCGAGGCTGAGCCAAGCAGCCGAGGTTATCCGCGCCTTCGCCGATCTTTTGCGCCAAAAC
GATCCCACCGGACTGAAGCCCTGGCTAGAAGCTGCAGCCGCGACCGATCTCGGCGGCTTCGTCACAGGGCTCCGGCAGGACGAGCCAGCCGTGCGCGCCG
CCATCGTCGAGCCCTGGAGCAACGGCCCCGTCGAGGGGCAGGTCAACCGCCTCAAGCTGATCAAACGCAGCATGTATGGTCGAGCCGGATTCGATCTCCT
GCGACAGCGCGTCCTGCATGCTGCATGAGCCGCAATCAGCAAGGCTTGATCGGACGCCAAGCCTTCAGCACCGAAAGTGCGGAAGAACC
GGTCCCGGACGGCCTACACGTCGATGACCTGACGCTGGATGAAACGGGGTTGCTGATCACCGCCCGGACCACAGCGGCCCAGGCGTCCTGTCGGGTCTGC
GGGCGTGCTTCGGCGCGGGTGCACAGCCGGTATTGGCGGACGTTCAAGGACCTGCCCTGGCAGGACCGGTCGGTGACGTGGCGGGTGCAGGTCCGCCGCT
TCCGCTGCGGCCATTGCCCGGGGCGGATCTTCGCCGAACGCGTGCCGGGGCTCGGCACGCGCAAGTCGCGCCGCAGCGACCGGTTGGCTGAGGCGCAGAC
CGACATCGGCATGGTGCTGGGTGGTGAGGCCGGCGCAAGGTTGTCGCGGCGGCTGGCCATGCCTGTCAGTGGCGACACCGTCCTGCGCTTGATCCGTCGT
CGCGGGACCGTACCGTCTCCGCCGCCGCGGGTGGTCGGCATCGACGATTGGGCATGGCGGCGCGGCCGGTCCTACGGCACCATCGTGTGCGACCTGGAGC
GGCGGCGCGTCATCGACCTGTTGCCCGGCCGCTCGTCGGCACCGGTGCGGGATTGGCTCGCTGCCCATCCGAGCGTGACCGTGGTCAGCCGCGACCGCTC
GGGGCCCTATGCCGAGGCTGCGCGTACGGGAGCGCCGACGGCGACGCAGGTCGCGGATCGCTGGCACCTGCTCGTCAACGCATCCGAGGCGCTGCGCGGC
GCGGTCGAGCGACACCAGCTGGAGATCCGGAGCGTGGCCCACCGCGCCGTGAAGGATCCCCCTGCCTCCCTGGGCCTGAGGGAGACCGCAGCCAAGCCGG
AGGTGACAAGCCGACGACGTGATCGCTGTGAGGCGGCCCTGTGCCTCCACGGCGAAGGTCTGCCGACCAAGGAGATTGCTCGCCGTCTCGGCGCGTCCCG
CAACGCCGTGCGCCGCTGGGTGCGGGCAGGCCGGTTCGTGCCCTACCGCCGCGCACCGGGTTCAAGCCGGCTCGACCGCTATCTCCCCTTCGTCGAGGCC
CGCTGGCAGGAAGGCCAGCACAGCGCCACCGCGCTTTGCCAGGAGTTGCACGCACAAGGCTTCACGGGTGGCTACGACATCGTCCGGCGCTGGGCTGCGC
GTCGGAAGCGAGGGGCACCGGCTCGACCACCGTCCACTCGGATCCCCTCGACGCGCCGCATCACCCGGTGGCTCACGGGCGACCCAGCTGCACTGTCGCC
AGAGGATCGCGCCTTCACCGAAGCGCTCTGCAGCGCCGCGCCGAGGCTGAGCCAAGCAGCCGAGGTTATCCGCGCCTTCGCCGATCTTTTGCGCCAAAAC
GATCCCACCGGACTGAAGCCCTGGCTAGAAGCTGCAGCCGCGACCGATCTCGGCGGCTTCGTCACAGGGCTCCGGCAGGACGAGCCAGCCGTGCGCGCCG
CCATCGTCGAGCCCTGGAGCAACGGCCCCGTCGAGGGGCAGGTCAACCGCCTCAAGCTGATCAAACGCAGCATGTATGGTCGAGCCGGATTCGATCTCCT
GCGACAGCGCGTCCTGCATGCTGCATGAGCCGCAATCAGCAAGGCTTGATCGGACGCCAAGCCTTCAGCACCGAAAGTGCGGAAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1536 bp | 511 aa | 93 | 1628 | + | No |
Chemistry : Unknow
ORF sequence :
MPSVPDGLHVDDLTLDETGLLITARTTAAQASCRVCGRASARVHSRYWRTFKDLPWQDRSVTWRVQVRRFRCGHCPGRIFAERVPGLGTRKSRRSDRLAE
AQTDIGMVLGGEAGARLSRRLAMPVSGDTVLRLIRRRGTVPSPPPRVVGIDDWAWRRGRSYGTIVCDLERRRVIDLLPGRSSAPVRDWLAAHPSVTVVSR
DRSGPYAEAARTGAPTATQVADRWHLLVNASEALRGAVERHQLEIRSVAHRAVKDPPASLGLRETAAKPEVTSRRRDRCEAALCLHGEGLPTKEIARRLG
ASRNAVRRWVRAGRFVPYRRAPGSSRLDRYLPFVEARWQEGQHSATALCQELHAQGFTGGYDIVRRWAARRKRGAPARPPSTRIPSTRRITRWLTGDPAA
LSPEDRAFTEALCSAAPRLSQAAEVIRAFADLLRQNDPTGLKPWLEAAAATDLGGFVTGLRQDEPAVRAAIVEPWSNGPVEGQVNRLKLIKRSMYGRAGF
DLLRQRVLHAA
AQTDIGMVLGGEAGARLSRRLAMPVSGDTVLRLIRRRGTVPSPPPRVVGIDDWAWRRGRSYGTIVCDLERRRVIDLLPGRSSAPVRDWLAAHPSVTVVSR
DRSGPYAEAARTGAPTATQVADRWHLLVNASEALRGAVERHQLEIRSVAHRAVKDPPASLGLRETAAKPEVTSRRRDRCEAALCLHGEGLPTKEIARRLG
ASRNAVRRWVRAGRFVPYRRAPGSSRLDRYLPFVEARWQEGQHSATALCQELHAQGFTGGYDIVRRWAARRKRGAPARPPSTRIPSTRRITRWLTGDPAA
LSPEDRAFTEALCSAAPRLSQAAEVIRAFADLLRQNDPTGLKPWLEAAAATDLGGFVTGLRQDEPAVRAAIVEPWSNGPVEGQVNRLKLIKRSMYGRAGF
DLLRQRVLHAA
Blast result :
Comments
ISMdi2 is 59% aa similar to ISAli18.
References
[1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.