ISMex36
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1467 bp
Ends
IR Length : 17
IRL : GAGCCCGTCCGAGTAACCCCCTCGACGGCGGGGCCTGGGGGTGATTCACT
IRR : GAGCCCGTCCGAGTAACGAGTTTATGAGGCAGGATGAGTGTCGAAGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCAGAATAC | CTAG | CCCGTCTTAT | 4 |
DNA sequence
GAGCCCGTCCGAGTAACCCCCTCGACGGCGGGGCCTGGGGGTGATTCACTCGGCTCATGGCCAAGGTGTTTCGCTCCTGGGATGTCGATCAGGGCTGGTT
GCTGCCGCCCTCGCTGCACGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTCCGCGACACGGTGCGGGAGGCCCTCGACCTTTCGGCCATCCTCGAC
ACCTACAGCGAAGAGCGTGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCGCTCCTGCTCTACGGCTACAGCCGCGGCCTGTACTCCTCGCGTCAGC
TCGCCCGGGCCTGCGAGGAGCGGGTCGACGTCATGGCGGTGACCGGGTTGAACCGCCCGGATTTCCGCACCATCGCCGACTTCCGCAAGCGCCACCTCGT
GGCCTTGTCCGACCTGTTCGTGCAGGTGCTGCGCCTGTGCCGGGCGGCGGGTCTCGTCGAGTTCGCCCACGTGGCAGTGGACGGCACCAAGGTGAAGGCG
AACGCCTCCCGCCACAAGGCGATGAGCTACGGACGCATGAAGACGGCCGAGCCGGCGCTGGCCGCCGAGGTCGATGCCTGGCTGCAGCAAGCGCGCGAGG
CCGACGCGGCGGAGGACCAGGCTCACGGCGTGGACCGGCGCGGCGACGAGACGCCGGACTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCTCTGGAGGCGGAGGCTGCTGATCCGCCCAACCCCGAGGACGAGAGCGGGCCGGGCGCATCCTCGGGCATGCGCTGGCAGGGGCGGCCC
CTGCGCGGCGAAGACGGCGGTCCGCCCGACCGGGCCCAGCGCAACTTCACCGATCCGGACAGCCGCATCCTGCCCACGCGCGATGGCTTCGTGCAGGGCT
ACAACGGGCAGATCGCCGTCGACGCCGCGCATCAGGTGATCGTCGCGCACCGCCTCGTGACCAACTCGGCCGACTACCGTGCCCTCGTGCCGCTCGTGGA
CGACGTCCGCGCTCATCTCGGGCGCAAACCCCGCGAGGTCTCCGGCGATGCTGGATTTGCCAACGAGGCGAACTTAGCCGCGCTGCAGGTGCGGGGCATC
ACGGGCTACCTCGCTCCGGGTCGAGCACGTCATGGCGAGGCGGACGCGGCCGGCCGCCGGAGGCTGACGAAGATGCCGTTGATGAGCGCGATGGCTGTGC
GCCTGAAGCGGGCTGGCCGCCGCAGCCGCTACCGCCGCAGGAAGCAGGTGGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTCCGGGGTCTCGATCAGGTCCGGGGCGAATGGGCGATGATCTGCACGGCCCACAACCTCCTCAAACTGGCGAGGCCCGGCCACTGAGCCCAAAGC
CGACGCGCACGTCTGCTCAGACTTCGACACTCATCCTGCCTCATAAACTCGTTACTCGGACGGGCTC
GCTGCCGCCCTCGCTGCACGAGTTCGTGCCGCCCGGGCACATGGCGCACTTCGTCCGCGACACGGTGCGGGAGGCCCTCGACCTTTCGGCCATCCTCGAC
ACCTACAGCGAAGAGCGTGGCTACCCGCCCTACCATCCCGGCATGATGGTGGCGCTCCTGCTCTACGGCTACAGCCGCGGCCTGTACTCCTCGCGTCAGC
TCGCCCGGGCCTGCGAGGAGCGGGTCGACGTCATGGCGGTGACCGGGTTGAACCGCCCGGATTTCCGCACCATCGCCGACTTCCGCAAGCGCCACCTCGT
GGCCTTGTCCGACCTGTTCGTGCAGGTGCTGCGCCTGTGCCGGGCGGCGGGTCTCGTCGAGTTCGCCCACGTGGCAGTGGACGGCACCAAGGTGAAGGCG
AACGCCTCCCGCCACAAGGCGATGAGCTACGGACGCATGAAGACGGCCGAGCCGGCGCTGGCCGCCGAGGTCGATGCCTGGCTGCAGCAAGCGCGCGAGG
CCGACGCGGCGGAGGACCAGGCTCACGGCGTGGACCGGCGCGGCGACGAGACGCCGGACTGGATGGCCGACAAGCAGCGGCGGCTGGAGACGATCCGCGC
CGCCAAGGCCGCTCTGGAGGCGGAGGCTGCTGATCCGCCCAACCCCGAGGACGAGAGCGGGCCGGGCGCATCCTCGGGCATGCGCTGGCAGGGGCGGCCC
CTGCGCGGCGAAGACGGCGGTCCGCCCGACCGGGCCCAGCGCAACTTCACCGATCCGGACAGCCGCATCCTGCCCACGCGCGATGGCTTCGTGCAGGGCT
ACAACGGGCAGATCGCCGTCGACGCCGCGCATCAGGTGATCGTCGCGCACCGCCTCGTGACCAACTCGGCCGACTACCGTGCCCTCGTGCCGCTCGTGGA
CGACGTCCGCGCTCATCTCGGGCGCAAACCCCGCGAGGTCTCCGGCGATGCTGGATTTGCCAACGAGGCGAACTTAGCCGCGCTGCAGGTGCGGGGCATC
ACGGGCTACCTCGCTCCGGGTCGAGCACGTCATGGCGAGGCGGACGCGGCCGGCCGCCGGAGGCTGACGAAGATGCCGTTGATGAGCGCGATGGCTGTGC
GCCTGAAGCGGGCTGGCCGCCGCAGCCGCTACCGCCGCAGGAAGCAGGTGGTCGAGCCGGTGTTCGGGCAGATCAAGCAGGCCAGAGGCTTCCGACAGTT
CCTGCTCCGGGGTCTCGATCAGGTCCGGGGCGAATGGGCGATGATCTGCACGGCCCACAACCTCCTCAAACTGGCGAGGCCCGGCCACTGAGCCCAAAGC
CGACGCGCACGTCTGCTCAGACTTCGACACTCATCCTGCCTCATAAACTCGTTACTCGGACGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1335 bp | 444 aa | 57 | 1391 | + | No |
Chemistry : DDE
ORF sequence :
MAKVFRSWDVDQGWLLPPSLHEFVPPGHMAHFVRDTVREALDLSAILDTYSEERGYPPYHPGMMVALLLYGYSRGLYSSRQLARACEERVDVMAVTGLNR
PDFRTIADFRKRHLVALSDLFVQVLRLCRAAGLVEFAHVAVDGTKVKANASRHKAMSYGRMKTAEPALAAEVDAWLQQAREADAAEDQAHGVDRRGDETP
DWMADKQRRLETIRAAKAALEAEAADPPNPEDESGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNSADYRALVPLVDDVRAHLGRKPREVSGDAGFANEANLAALQVRGITGYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRRRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLARPGH
PDFRTIADFRKRHLVALSDLFVQVLRLCRAAGLVEFAHVAVDGTKVKANASRHKAMSYGRMKTAEPALAAEVDAWLQQAREADAAEDQAHGVDRRGDETP
DWMADKQRRLETIRAAKAALEAEAADPPNPEDESGPGASSGMRWQGRPLRGEDGGPPDRAQRNFTDPDSRILPTRDGFVQGYNGQIAVDAAHQVIVAHRL
VTNSADYRALVPLVDDVRAHLGRKPREVSGDAGFANEANLAALQVRGITGYLAPGRARHGEADAAGRRRLTKMPLMSAMAVRLKRAGRRSRYRRRKQVVE
PVFGQIKQARGFRQFLLRGLDQVRGEWAMICTAHNLLKLARPGH
Blast result :
Comments
ISMex36 is 58% aa similar to ISKpn6.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS ONE Submitted.