ISMex17
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| ND | Methylobacterium dichloromethanicum | Methylobacterium extorquens AM1 Methylobacterium dichloromethanicum DM4 Methylobacterium extorquens PA1 |
DNA section
IS Length : 1132 bp
Ends
Left end : CTTGTAACTTGATCCCACCTTCGCCGGGTATGCTCTTCGGCGCGGTGGCGGGTGAGAGACCGTTAGCCTCTGGGGCCACCAAGCCCGCAAGTGAGCCAGG
Right end : CCCTGATTGCCACCGCTCGGAAGCTGATCACCATCCTCAACGCCATCCTGAGAGACGGAACGCCATGGCAACCCGCTTGACCAGCAAGACAGTCGCTCAC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| TCGATAGGGCGC | GCCTCGCGCAGG | 0 | |
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| ACCGAGCCGA | AGGCTACTGC | 0 | |
| GCTCGAGCCC | ATCGAGGAGG | 0 | |
| GCAGTAGCCT | TCGGCTCGGT | 0 | |
| TGTGAACGGG | AGGGTACCGC | 0 | |
| TTCTTCCGGA | AGGTTAGGAT | 0 | |
| GTTCGGCAAT | CGGCTACCGG | 0 |
DNA sequence
CTTGTAACTTGATCCCACCTTCGCCGGGTATGCTCTTCGGCGCGGTGGCGGGTGAGAGACCGTTAGCCTCTGGGGCCACCAAGCCCGCAAGTGAGCCAGG
GTCCTCGCCCGCCGTTCCATCGAACCCGAACAGTCGCTTGGGCCGCTCAACGCGAAGCCCGCTTGCGCAAGGATGGGATCAGATGGACGCTCCTGTTGTT
GGGATCGATGTGGCCCGTGACCGCCTCGATATTCATGTTCATCCCTCTGGAGCGAACTTCGCCGTTGATCGTACGACCGAGGGTGTGGAGCAGCTGTGCG
AACGCCTCCGGCCCCTGAAGCCGAAGCTCGTCGTCCTGGAGGCAACCGGCGGTTTGGAAGCCATGGTGGCACGTGCTCTCACCACCTGGAGGCTACCAGC
CGTGATCGTGAACCCAGCACAGGTCCGTGCTTTCGCTCACGCCTTGGGCCAACGCGCCAAGACCGACCGCATCGACGCCACCGTGATCGCCCGGTTCGCG
GCGGCCACCAACCCACCCGTTCGCGCTCGGGCCGATGCCGAGACTCAGGCCTTGGCTGATCTCGTCACAAGACGCCGTCAGATCGTAGGACTGATCGCGT
CCGAGCGGCAGCGAGCGAGCCAAGCTCCACCGTGCATTCGAGACAGCGTCCGGCGCGTCATAGAGGCGTTGGAGCAGGAGCAGAGTGTGATCGACCGCTC
GATCGATGCAGAGGTAGACCGGTCGCTTGAATGGCGCAGGAAGGAGACCCTCCTGACCTCCGTTCCTGGTGTTGGACCGACGATCGCACGAACCCTGATC
GCGGAGCTGCCTGAGCTTGGAAGCCTCAACCGGAAGCAAGTCGCCGCGCTGGTCGGCTTGGCCCCTTGGACGCGGCAATCCGGTCAGTGGCGAGGGAGGA
GCTTCATTGCAGGCGGCCGCGCACCTGTTCGCACGGCGCTGTTCATGGGGGCCATGGTGGCCAGCCGTCACAATGCCGCGCTGAAAACCTTCCGCGACCG
GCTCATCGCAGCCGGTAAGCCCAAGCTCGTTGCCCTGATTGCCACCGCTCGGAAGCTGATCACCATCCTCAACGCCATCCTGAGAGACGGAACGCCATGG
CAACCCGCTTGACCAGCAAGACAGTCGCTCAC
GTCCTCGCCCGCCGTTCCATCGAACCCGAACAGTCGCTTGGGCCGCTCAACGCGAAGCCCGCTTGCGCAAGGATGGGATCAGATGGACGCTCCTGTTGTT
GGGATCGATGTGGCCCGTGACCGCCTCGATATTCATGTTCATCCCTCTGGAGCGAACTTCGCCGTTGATCGTACGACCGAGGGTGTGGAGCAGCTGTGCG
AACGCCTCCGGCCCCTGAAGCCGAAGCTCGTCGTCCTGGAGGCAACCGGCGGTTTGGAAGCCATGGTGGCACGTGCTCTCACCACCTGGAGGCTACCAGC
CGTGATCGTGAACCCAGCACAGGTCCGTGCTTTCGCTCACGCCTTGGGCCAACGCGCCAAGACCGACCGCATCGACGCCACCGTGATCGCCCGGTTCGCG
GCGGCCACCAACCCACCCGTTCGCGCTCGGGCCGATGCCGAGACTCAGGCCTTGGCTGATCTCGTCACAAGACGCCGTCAGATCGTAGGACTGATCGCGT
CCGAGCGGCAGCGAGCGAGCCAAGCTCCACCGTGCATTCGAGACAGCGTCCGGCGCGTCATAGAGGCGTTGGAGCAGGAGCAGAGTGTGATCGACCGCTC
GATCGATGCAGAGGTAGACCGGTCGCTTGAATGGCGCAGGAAGGAGACCCTCCTGACCTCCGTTCCTGGTGTTGGACCGACGATCGCACGAACCCTGATC
GCGGAGCTGCCTGAGCTTGGAAGCCTCAACCGGAAGCAAGTCGCCGCGCTGGTCGGCTTGGCCCCTTGGACGCGGCAATCCGGTCAGTGGCGAGGGAGGA
GCTTCATTGCAGGCGGCCGCGCACCTGTTCGCACGGCGCTGTTCATGGGGGCCATGGTGGCCAGCCGTCACAATGCCGCGCTGAAAACCTTCCGCGACCG
GCTCATCGCAGCCGGTAAGCCCAAGCTCGTTGCCCTGATTGCCACCGCTCGGAAGCTGATCACCATCCTCAACGCCATCCTGAGAGACGGAACGCCATGG
CAACCCGCTTGACCAGCAAGACAGTCGCTCAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 930 bp | 309 aa | 183 | 1112 | + | No |
Chemistry : DEDD
ORF sequence :
MDAPVVGIDVARDRLDIHVHPSGANFAVDRTTEGVEQLCERLRPLKPKLVVLEATGGLEAMVARALTTWRLPAVIVNPAQVRAFAHALGQRAKTDRIDAT
VIARFAAATNPPVRARADAETQALADLVTRRRQIVGLIASERQRASQAPPCIRDSVRRVIEALEQEQSVIDRSIDAEVDRSLEWRRKETLLTSVPGVGPT
IARTLIAELPELGSLNRKQVAALVGLAPWTRQSGQWRGRSFIAGGRAPVRTALFMGAMVASRHNAALKTFRDRLIAAGKPKLVALIATARKLITILNAIL
RDGTPWQPA
VIARFAAATNPPVRARADAETQALADLVTRRRQIVGLIASERQRASQAPPCIRDSVRRVIEALEQEQSVIDRSIDAEVDRSLEWRRKETLLTSVPGVGPT
IARTLIAELPELGSLNRKQVAALVGLAPWTRQSGQWRGRSFIAGGRAPVRTALFMGAMVASRHNAALKTFRDRLIAAGKPKLVALIATARKLITILNAIL
RDGTPWQPA
Blast result :
Comments
ISMex17 is 65% aa similar to ISHne3.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.