ISMex17

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Methylobacterium dichloromethanicum
Methylobacterium extorquens AM1
Methylobacterium dichloromethanicum DM4
Methylobacterium extorquens PA1
DNA section
IS Length : 1132 bp

Ends


Left end : CTTGTAACTTGATCCCACCTTCGCCGGGTATGCTCTTCGGCGCGGTGGCGGGTGAGAGACCGTTAGCCTCTGGGGCCACCAAGCCCGCAAGTGAGCCAGG
Right end : CCCTGATTGCCACCGCTCGGAAGCTGATCACCATCCTCAACGCCATCCTGAGAGACGGAACGCCATGGCAACCCGCTTGACCAGCAAGACAGTCGCTCAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCAGTAGCCTTCGGCTCGGT0
GCAGTAGCCTTCGGCTCGGT0
GCAGTAGCCTTCGGCTCGGT0
TCGATAGGGCGCGCCTCGCGCAGG0
GCAGTAGCCTTCGGCTCGGT0
GCAGTAGCCTTCGGCTCGGT0
ACCGAGCCGAAGGCTACTGC0
GCTCGAGCCCATCGAGGAGG0
GCAGTAGCCTTCGGCTCGGT0
TGTGAACGGGAGGGTACCGC0
TTCTTCCGGAAGGTTAGGAT0
GTTCGGCAATCGGCTACCGG0

DNA sequence

CTTGTAACTTGATCCCACCTTCGCCGGGTATGCTCTTCGGCGCGGTGGCGGGTGAGAGACCGTTAGCCTCTGGGGCCACCAAGCCCGCAAGTGAGCCAGG
GTCCTCGCCCGCCGTTCCATCGAACCCGAACAGTCGCTTGGGCCGCTCAACGCGAAGCCCGCTTGCGCAAGGATGGGATCAGATGGACGCTCCTGTTGTT
GGGATCGATGTGGCCCGTGACCGCCTCGATATTCATGTTCATCCCTCTGGAGCGAACTTCGCCGTTGATCGTACGACCGAGGGTGTGGAGCAGCTGTGCG
AACGCCTCCGGCCCCTGAAGCCGAAGCTCGTCGTCCTGGAGGCAACCGGCGGTTTGGAAGCCATGGTGGCACGTGCTCTCACCACCTGGAGGCTACCAGC
CGTGATCGTGAACCCAGCACAGGTCCGTGCTTTCGCTCACGCCTTGGGCCAACGCGCCAAGACCGACCGCATCGACGCCACCGTGATCGCCCGGTTCGCG
GCGGCCACCAACCCACCCGTTCGCGCTCGGGCCGATGCCGAGACTCAGGCCTTGGCTGATCTCGTCACAAGACGCCGTCAGATCGTAGGACTGATCGCGT
CCGAGCGGCAGCGAGCGAGCCAAGCTCCACCGTGCATTCGAGACAGCGTCCGGCGCGTCATAGAGGCGTTGGAGCAGGAGCAGAGTGTGATCGACCGCTC
GATCGATGCAGAGGTAGACCGGTCGCTTGAATGGCGCAGGAAGGAGACCCTCCTGACCTCCGTTCCTGGTGTTGGACCGACGATCGCACGAACCCTGATC
GCGGAGCTGCCTGAGCTTGGAAGCCTCAACCGGAAGCAAGTCGCCGCGCTGGTCGGCTTGGCCCCTTGGACGCGGCAATCCGGTCAGTGGCGAGGGAGGA
GCTTCATTGCAGGCGGCCGCGCACCTGTTCGCACGGCGCTGTTCATGGGGGCCATGGTGGCCAGCCGTCACAATGCCGCGCTGAAAACCTTCCGCGACCG
GCTCATCGCAGCCGGTAAGCCCAAGCTCGTTGCCCTGATTGCCACCGCTCGGAAGCTGATCACCATCCTCAACGCCATCCTGAGAGACGGAACGCCATGG
CAACCCGCTTGACCAGCAAGACAGTCGCTCAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa1831112+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDAPVVGIDVARDRLDIHVHPSGANFAVDRTTEGVEQLCERLRPLKPKLVVLEATGGLEAMVARALTTWRLPAVIVNPAQVRAFAHALGQRAKTDRIDAT
VIARFAAATNPPVRARADAETQALADLVTRRRQIVGLIASERQRASQAPPCIRDSVRRVIEALEQEQSVIDRSIDAEVDRSLEWRRKETLLTSVPGVGPT
IARTLIAELPELGSLNRKQVAALVGLAPWTRQSGQWRGRSFIAGGRAPVRTALFMGAMVASRHNAALKTFRDRLIAAGKPKLVALIATARKLITILNAIL
RDGTPWQPA

 

Blast result :
Comments
ISMex17 is 65% aa similar to ISHne3.
References
1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.