ISMex24
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1677 bp
Ends
IR Length : 29/34
IRL : GGCGTGCAATTGGGGCTCTGACTCACTCTCGCTGGTACCAGCGGCGTTGA
IRR : GGCGTGGAATAAGGGCTCAGACGCACTCTCGCTGATCATCGAGGCGTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACCCCGGATC | TAATCACAGC | 0 | |
GGTGTGATTA | GATCCGGGGT | 0 |
DNA sequence
GGCGTGCAATTGGGGCTCTGACTCACTCTCGCTGGTACCAGCGGCGTTGAGTTTGCGGACATCCACGATGGAGCCGCAGCATGCGCCCCCGCTTCCGGTC
GTCGAGCCTCGTACCCGCTGGTTTCGTCGTCGATCATCTCGATAGCGACGCGGACCGGATCGGTCTGGTCGTGAGATCGGGAGCCGCGGTGGCGACCTGC
CCAGATTGTAGAACGCCTTCGCGTCGCCTCCGAAGCCGCTACCGGCGCCGTGCCGCCGACCTGCCGCTCGGCGGCCGGCGCGTCGAGCTCCGGGTCGTCG
TACGACGTTTTTGGTGTGGCGCAGCTGCCTGCAAGCGGAAGATCTTCGCCGAGCGCTTTCCCGATGACGTCCTGCCCGCCTTCGCGCGACGCACCTCGCG
GCTGGAGCAGATCGTCCATCACCTTGGACTCGCACTCGGTGGTCGGCCCGGTGCGAGCCTCGCCCAGCGCCTCAGGCTGCCCGTCAGTCGCGATACGCTC
CTGCGCGTCATCCGCCGTCGGGCGACCACACGATCCGATCCGCTCGGCGTCATCGGCATCGACGACTTCGCCTGGCGACGCAATCACCGCTACGGCACCC
TGGTCTGCGATCTCGAACGCCGCCGCATCGTCGCGCTCCTGCCAGACCGCGAGCAGGCCACCGCACAGACTTGGCTGAAGGAGAACGCCTCGATCCAGAT
CGTCGCCCGCGATCGGGGGGCGGATACGGTGAGGCGATCGCCCGCGCTCTGCCGCAGGCTATCCAGGTCGCCGACCGCTGGCACCTCATGGAGAACGCCA
GCCGCGGCTTCGTCGATGCCGTGCGCAGGTCGATGCGTCAGGTTCGCGAGATCATCAGCGCGGCCGCCCTTGATCCGGCGCTCCTCACAGCGGCCGAGCG
CATCCAGTACGAGGGTTACCAGCGGCGGGAGGAGGCGGACGCGGCCATCCGCGCACTCGCCGAAGCAGGCGTTCCGATCCGCCGGATTGGCCAGCGCCTG
GGCCACAGCCGCAAGGTGGTGCGTGCGGTCCTGCGCGGCGAGCGCACGGACGTCTTCCGGGTCCGCCAGAGCTCGCTCGAAGCCTATCTGCCCTGGCTCG
ACGCCCAGTGGGACGCAAGCAGCCGCAATGCGACCGAGATCTGGCGACAGGCGAAGCTGCAGGGCTTCCGTGGATCACTCCGCGTCGTCGGGGAATGGGC
GACGCGACGTCGGCGCGCAGAGCAGGCCAACATCGAGCAGCTTCAGCGCGTACCGTCGGCGCGAACCTTGGCACGATGGCTGACGACCGGTCGCGATCGG
TTGACCAAGGCCGAGACGCTGACCGTGGCCACCGTCGAGGACGGGATGCTGGCGCTGGTCGAGGCGCGCGAGGTGGTGGGCGCCTTCCAGACGATGGTAA
GAGCGATGGAGCCTGGCCGGCTCGAAGGATGGCTCAGGCGAGCCGAGGCGAGTCTCGTCGCCTCCTTCGCGCGCGGCATTGGTCGGGACCGATCCGCAGT
TCAGGCCGCGATCACGCTGCCATGGTCGAACGGCCAGACGGAGGGGCAGATCACGAAGCTCAAGCTCGTGAAGCGCCAGATGTACGGCCGCGGCAAGATC
GACCTGCTGCAAGCTCGCCTGATCGGCCTCACGCCTCGATGATCAGCGAGAGTGCGTCTGAGCCCTTATTCCACGCC
GTCGAGCCTCGTACCCGCTGGTTTCGTCGTCGATCATCTCGATAGCGACGCGGACCGGATCGGTCTGGTCGTGAGATCGGGAGCCGCGGTGGCGACCTGC
CCAGATTGTAGAACGCCTTCGCGTCGCCTCCGAAGCCGCTACCGGCGCCGTGCCGCCGACCTGCCGCTCGGCGGCCGGCGCGTCGAGCTCCGGGTCGTCG
TACGACGTTTTTGGTGTGGCGCAGCTGCCTGCAAGCGGAAGATCTTCGCCGAGCGCTTTCCCGATGACGTCCTGCCCGCCTTCGCGCGACGCACCTCGCG
GCTGGAGCAGATCGTCCATCACCTTGGACTCGCACTCGGTGGTCGGCCCGGTGCGAGCCTCGCCCAGCGCCTCAGGCTGCCCGTCAGTCGCGATACGCTC
CTGCGCGTCATCCGCCGTCGGGCGACCACACGATCCGATCCGCTCGGCGTCATCGGCATCGACGACTTCGCCTGGCGACGCAATCACCGCTACGGCACCC
TGGTCTGCGATCTCGAACGCCGCCGCATCGTCGCGCTCCTGCCAGACCGCGAGCAGGCCACCGCACAGACTTGGCTGAAGGAGAACGCCTCGATCCAGAT
CGTCGCCCGCGATCGGGGGGCGGATACGGTGAGGCGATCGCCCGCGCTCTGCCGCAGGCTATCCAGGTCGCCGACCGCTGGCACCTCATGGAGAACGCCA
GCCGCGGCTTCGTCGATGCCGTGCGCAGGTCGATGCGTCAGGTTCGCGAGATCATCAGCGCGGCCGCCCTTGATCCGGCGCTCCTCACAGCGGCCGAGCG
CATCCAGTACGAGGGTTACCAGCGGCGGGAGGAGGCGGACGCGGCCATCCGCGCACTCGCCGAAGCAGGCGTTCCGATCCGCCGGATTGGCCAGCGCCTG
GGCCACAGCCGCAAGGTGGTGCGTGCGGTCCTGCGCGGCGAGCGCACGGACGTCTTCCGGGTCCGCCAGAGCTCGCTCGAAGCCTATCTGCCCTGGCTCG
ACGCCCAGTGGGACGCAAGCAGCCGCAATGCGACCGAGATCTGGCGACAGGCGAAGCTGCAGGGCTTCCGTGGATCACTCCGCGTCGTCGGGGAATGGGC
GACGCGACGTCGGCGCGCAGAGCAGGCCAACATCGAGCAGCTTCAGCGCGTACCGTCGGCGCGAACCTTGGCACGATGGCTGACGACCGGTCGCGATCGG
TTGACCAAGGCCGAGACGCTGACCGTGGCCACCGTCGAGGACGGGATGCTGGCGCTGGTCGAGGCGCGCGAGGTGGTGGGCGCCTTCCAGACGATGGTAA
GAGCGATGGAGCCTGGCCGGCTCGAAGGATGGCTCAGGCGAGCCGAGGCGAGTCTCGTCGCCTCCTTCGCGCGCGGCATTGGTCGGGACCGATCCGCAGT
TCAGGCCGCGATCACGCTGCCATGGTCGAACGGCCAGACGGAGGGGCAGATCACGAAGCTCAAGCTCGTGAAGCGCCAGATGTACGGCCGCGGCAAGATC
GACCTGCTGCAAGCTCGCCTGATCGGCCTCACGCCTCGATGATCAGCGAGAGTGCGTCTGAGCCCTTATTCCACGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1562 bp | 520 aa | 81 | 1642 | + | No |
Chemistry : Unknow
ORF sequence :
MRPRFRSSSLVPAGFVVDHLDSDADRIGLVVRSGAAVATCPDCRTPSRRLRSRYRRRAADLPLGGRRVELRVVVRRFWCGAAACKRKIFAERFPDDVLPA
FARRTSRLEQIVHHLGLALGGRPGASLAQRLRLPVSRDTLLRVIRRRATTRSDPLGVIGIDDFAWRRNHRYGTLVCDLERRRIVALLPDREQATAQTWLK
ENASIQIVARDRGGGYGEAIARALPQAIQVADRWHLMENASRGFVDAVRRSMRQVREIISAAALDPALLTAAERIQYEGYQRREEADAAIRALAEAGVPI
RRIGQRLGHSRKVVRAVLRGERTDVFRVRQSSLEAYLPWLDAQWDASSRNATEIWRQAKLQGFRGSLRVVGEWATRRRRAEQANIEQLQRVPSARTLARW
LTTGRDRLTKAETLTVATVEDGMLALVEAREVVGAFQTMVRAMEPGRLEGWLRRAEASLVASFARGIGRDRSAVQAAITLPWSNGQTEGQITKLKLVKRQ
MYGRGKIDLLQARLIGLTPR
FARRTSRLEQIVHHLGLALGGRPGASLAQRLRLPVSRDTLLRVIRRRATTRSDPLGVIGIDDFAWRRNHRYGTLVCDLERRRIVALLPDREQATAQTWLK
ENASIQIVARDRGGGYGEAIARALPQAIQVADRWHLMENASRGFVDAVRRSMRQVREIISAAALDPALLTAAERIQYEGYQRREEADAAIRALAEAGVPI
RRIGQRLGHSRKVVRAVLRGERTDVFRVRQSSLEAYLPWLDAQWDASSRNATEIWRQAKLQGFRGSLRVVGEWATRRRRAEQANIEQLQRVPSARTLARW
LTTGRDRLTKAETLTVATVEDGMLALVEAREVVGAFQTMVRAMEPGRLEGWLRRAEASLVASFARGIGRDRSAVQAAITLPWSNGQTEGQITKLKLVKRQ
MYGRGKIDLLQARLIGLTPR
Blast result :
Comments
ISMex24 has two copies in AM1.
The transposase was reconstructed in silico : join (81-719;719-1642)
The other copy has 1-bp deletion at position 959 (A).
The transposase was reconstructed in silico : join (81-719;719-1642)
The other copy has 1-bp deletion at position 959 (A).
References
[1] Stephane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. (2009) PLoS ONE Submitted.