ISMex3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 Methylobacterium dichloromethanicum DM4 |
DNA section
IS Length : 1399 bp
Ends
IR Length : 22/25
IRL : GAGCTATGCGGGAGATTGGGTGACGACGGTGTGTTGAAGGCGGCGTATCG
IRR : GAGCTATGCAGGATTTTAGGTGACGGAGGCGGTCAGGCGGCGCGGTGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGCTAGAA | CCGACCCGG | AAGTGACGCC | 9 |
TCTTGGCGAT | GTCGCCAAGC | 0 | |
GACTGCGCCC | CGTCTGGGCC | 0 | |
GCTCAAGCGG | CCGCGCCGG | CACGTCAGTG | 9 |
GTCATCGACG | AGTTGGAGA | AGGCTGTCGC | 9 |
GCCGGCAGCC | GCTGACCGC | CGGTCCGCGG | 9 |
AAGGAGTCGG | CCTGAGGACA | 0 | |
CCTCGATGGA | ACTCGCGAT | CACCGACGAC | 9 |
CTCGCAGGGC | CCCTCGCGAC | 0 | |
AGCAGTTCGA | GGTCCAGCG | CGTCGACTAC | 9 |
ACGTCGGAGT | CGTCGGGGA | TCTCTGAGGC | 9 |
TCTATGTGGC | ACCCAAGAC | GGCCGCCTAC | 9 |
GGCGTGCCGG | TCCTGCGGA | AGGCAACGGG | 9 |
TGGTAGCGTG | GCCCTCCTC | AGGCAAAGGT | 9 |
CGGCCGGCCC | CTCGATCGA | CGGCAAGGGC | 9 |
GATGCCGACG | CTCTGCCTA | AAGGCACGGA | 9 |
GGAGGGGTGG | CGCGTTCGC | AAGGACGGTT | 9 |
GCTCTCCAGG | ATCTCCCAG | GCCTCGTCAG | 9 |
AGGGAGCCTG | TAAGTCAAA | CGCTCACGGC | 9 |
CTGCTCGGCT | CAGCCGCGG | CAGGGTTTAT | 9 |
TCCGGCACGG | GTCGCGACG | TGGGCCGGTA | 9 |
GTAAGCGAAG | AGGGCACGG | TGCCGCCGAC | 9 |
TTTTCATTGT | TCTGCTCCG | TACGCTCACC | 9 |
CGTCGGGCAG | CCGCGTGTG | CGGCATCACC | 9 |
TCGTCGGCGA | TGGCTGCCC | AGCCGTACGG | 9 |
DNA sequence
GAGCTATGCGGGAGATTGGGTGACGACGGTGTGTTGAAGGCGGCGTATCGAGGCGGGTGTCGAAGCCTGCCAGAACCTCTCAGCGAGAGCGATACGCCAT
GGAGACACCTACCAACATCGTCCGGCTTCGTCAGCCCGAAGACCTCGACGATCCCCTGACCGAGGTGCTGCGCGCCGGGGCCCGCCGCCTGCTCGCCCAA
GCTGTTGAGATGGAGGCGGACGCGTTCCTGAGCGCGATGCAGGATCTGCGGCTTCCGGACGGACGCGCGCGGCTGGTGCGGCACGGCCATGGCCCGGAGC
GGGCGATCCAGACCGGCATCGGCCCGGTGCCGGTGGCGCGGGTTCGTGTCCGAGATCGCGGCGCGAGCGGATCTGAGGACCGGGTTCGGTTCACCTCGAC
GCTCCTGCCGAAGTGGGCGCGGCGCACCCGCAGCCTGGATGCGTTACTGCCGGTCCTGTACCTACGCGGTGTCTCGACCGGCGACTTCCAGGAGGCGCTG
GCCGCCCTTCTGGGTCGGGATGCTCCGAACCTCTCGCCGGCCGTCATTGCCCGGCTGACCGCGGCCTGGGCGGACGAGTATGCCCGCTGGCAGGGCCGCG
ATCTCTCCGCACGCCGCTACGTCTATGTCTGGGCCGACGGCGTCTACCTGCAGGCCCGGATGGAGGACCAGGCCGAGTGCATGCTCGTGCTGATCGGGGC
GACGCCCGAGGGCCGGAAAGAACTCGTCGGCTTCCAGGTGGGCGTGCGCGAGAGCGCCCAGAGCTGGCGCGAGCTGCTCGTCGACGTGAAGCGGCGTGGG
CTGTCGATCGCGCCCGAGATCGCGGTCGGCGACGGCGCACTCGGCTTCTGGCAGGCCCTGGACGAGGTCTTTCCGGGCACCGCTCACCAACGGTGTTGGG
TTCACAAAGCGGCCAACGTCCTCGACAAGGTGCCGAAGTCCGTTCAGGGCGCGATGAAGGTGGATCTGCGTGAGATCCACGGTGCGCCGACCCGGGCGGC
GGCCGAGGCGGCGCTGGCTGTCTTCGTCGAGAAGTACGGGGCCAAGTACCCGCGCGCCGCCACCTGCCTGACCAAGGACCGGGAGGCGCTGCTGGCGTTC
TACGACTTCCCGGCCGAGCACTGGGACCACCTGCGCAGCTCGAACCCGATCGAGAGCGTGTTCGCCACGGTGCGGCATCGGACCGTGCGGACCAAAGGTG
CACTCTCGGCCACGACCGCCAAGCTGATGGTGTTCAAGCTGGTGATGGCAGCCTCGAAAACCTGGCGACGGTTGAAGGGCGAAAACCAGTTGCCGAAGGT
CGTGGCCGGCGTCATCTTCCGCGACGGGACCGAGGTCACCGCGAGCCCAGATCACCGCGCCGCCTGACCGCCTCCGTCACCTAAAATCCTGCATAGCTC
GGAGACACCTACCAACATCGTCCGGCTTCGTCAGCCCGAAGACCTCGACGATCCCCTGACCGAGGTGCTGCGCGCCGGGGCCCGCCGCCTGCTCGCCCAA
GCTGTTGAGATGGAGGCGGACGCGTTCCTGAGCGCGATGCAGGATCTGCGGCTTCCGGACGGACGCGCGCGGCTGGTGCGGCACGGCCATGGCCCGGAGC
GGGCGATCCAGACCGGCATCGGCCCGGTGCCGGTGGCGCGGGTTCGTGTCCGAGATCGCGGCGCGAGCGGATCTGAGGACCGGGTTCGGTTCACCTCGAC
GCTCCTGCCGAAGTGGGCGCGGCGCACCCGCAGCCTGGATGCGTTACTGCCGGTCCTGTACCTACGCGGTGTCTCGACCGGCGACTTCCAGGAGGCGCTG
GCCGCCCTTCTGGGTCGGGATGCTCCGAACCTCTCGCCGGCCGTCATTGCCCGGCTGACCGCGGCCTGGGCGGACGAGTATGCCCGCTGGCAGGGCCGCG
ATCTCTCCGCACGCCGCTACGTCTATGTCTGGGCCGACGGCGTCTACCTGCAGGCCCGGATGGAGGACCAGGCCGAGTGCATGCTCGTGCTGATCGGGGC
GACGCCCGAGGGCCGGAAAGAACTCGTCGGCTTCCAGGTGGGCGTGCGCGAGAGCGCCCAGAGCTGGCGCGAGCTGCTCGTCGACGTGAAGCGGCGTGGG
CTGTCGATCGCGCCCGAGATCGCGGTCGGCGACGGCGCACTCGGCTTCTGGCAGGCCCTGGACGAGGTCTTTCCGGGCACCGCTCACCAACGGTGTTGGG
TTCACAAAGCGGCCAACGTCCTCGACAAGGTGCCGAAGTCCGTTCAGGGCGCGATGAAGGTGGATCTGCGTGAGATCCACGGTGCGCCGACCCGGGCGGC
GGCCGAGGCGGCGCTGGCTGTCTTCGTCGAGAAGTACGGGGCCAAGTACCCGCGCGCCGCCACCTGCCTGACCAAGGACCGGGAGGCGCTGCTGGCGTTC
TACGACTTCCCGGCCGAGCACTGGGACCACCTGCGCAGCTCGAACCCGATCGAGAGCGTGTTCGCCACGGTGCGGCATCGGACCGTGCGGACCAAAGGTG
CACTCTCGGCCACGACCGCCAAGCTGATGGTGTTCAAGCTGGTGATGGCAGCCTCGAAAACCTGGCGACGGTTGAAGGGCGAAAACCAGTTGCCGAAGGT
CGTGGCCGGCGTCATCTTCCGCGACGGGACCGAGGTCACCGCGAGCCCAGATCACCGCGCCGCCTGACCGCCTCCGTCACCTAAAATCCTGCATAGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1311 bp | 436 aa | 57 | 1367 | + | No |
Chemistry : DDE
ORF sequence :
VSKPARTSQRERYAMETPTNIVRLRQPEDLDDPLTEVLRAGARRLLAQAVEMEADAFLSAMQDLRLPDGRARLVRHGHGPERAIQTGIGPVPVARVRVRD
RGASGSEDRVRFTSTLLPKWARRTRSLDALLPVLYLRGVSTGDFQEALAALLGRDAPNLSPAVIARLTAAWADEYARWQGRDLSARRYVYVWADGVYLQA
RMEDQAECMLVLIGATPEGRKELVGFQVGVRESAQSWRELLVDVKRRGLSIAPEIAVGDGALGFWQALDEVFPGTAHQRCWVHKAANVLDKVPKSVQGAM
KVDLREIHGAPTRAAAEAALAVFVEKYGAKYPRAATCLTKDREALLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAAS
KTWRRLKGENQLPKVVAGVIFRDGTEVTASPDHRAA
RGASGSEDRVRFTSTLLPKWARRTRSLDALLPVLYLRGVSTGDFQEALAALLGRDAPNLSPAVIARLTAAWADEYARWQGRDLSARRYVYVWADGVYLQA
RMEDQAECMLVLIGATPEGRKELVGFQVGVRESAQSWRELLVDVKRRGLSIAPEIAVGDGALGFWQALDEVFPGTAHQRCWVHKAANVLDKVPKSVQGAM
KVDLREIHGAPTRAAAEAALAVFVEKYGAKYPRAATCLTKDREALLAFYDFPAEHWDHLRSSNPIESVFATVRHRTVRTKGALSATTAKLMVFKLVMAAS
KTWRRLKGENQLPKVVAGVIFRDGTEVTASPDHRAA
Blast result :
Comments
ISMex3 is 71% aa similar to ISPpa1.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS ONE Submitted.
2] Ming-Chun Lee (2009) Direct submission.
2] Ming-Chun Lee (2009) Direct submission.