ISMex2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Methylobacterium extorquens | Methylobacterium extorquens AM1 |
DNA section
IS Length : 1031 bp
Ends
IR Length : 16/23
IRL : TGTGATCTTTCCATAGGTTGTCCATCCGGTCCGGACCGAGGAAGCTGAGG
IRR : TGTGGATGCTCAACAGGTTGTCCTCTGTCAGGCGGATGCGGCTGATGGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGAAGGCGC | t/gCTAGC | GCCACCCCT | 6 |
GAGCGCGCC | t/gCTAGC | CTGTGGATCA | 6 |
ACATCGCTG | c/gCTAGc/a | GCCGTCTCC | 8 |
TATTCGGCC | a/gCTAGc/a | GCCGCCACC | 8 |
GCGCCAAAC | GCTAGc/a | GCGCATTCC | 6 |
GCGGGGCGC | t/gCTAGc/a | TCCGGCGAA | 8 |
CCCTTCGCG | GCTAGc/a | GCCTCACGG | 6 |
GTGCGCCGC | t/gCTAGC | GCACCCGTG | 6 |
CCCAATTGC | t/gCTAGC | GTCGGGGTG | 6 |
CGCTGCTGA | t/gCTAGc/g | TCCTGCGCG | 8 |
GGAATGCGC | t/gCTAGc/a | ACGACGGCT | 8 |
GCAACAAAA | c/gCTAGc/a | GCGGCACAG | 8 |
GGATGATGC | t/gCTAGC | GGCCGGTGC | 6 |
GGACGACGC | t/gCTAGC | GGTACGGGG | 6 |
CGCTGCTGC | GCTAGc/a | GCGCTTTCC | 6 |
CGGTGCGGC | t/gCTAGc/a | GGAAAGACC | 8 |
DNA sequence
TGTGATCTTTCCATAGGTTGTCCATCCGGTCCGGACCGAGGAAGCTGAGGTTGCGAAGCTTCAGACCCCTTGGAGGGACCGGATGAACATCCACCAGAAT
GCGCGTTTGACGCCGTCCGGTCGAGAGAGGCTGGTGCGGTTGGCCCGGAGTGGCCTCGCCCCGCAGGCGGTGGCTGAGAGGATGGGGGTCTGTACCAAGA
CGGTCCGCAAGTGGGTCGCCCGCTTTGAAGCCGAAGGCACCGCCGGGCTGCAGGATCGCTCCTCGCGGCCCCGCGGCCTGTACCGGCCGACCCCGGCCGA
GACACAGGCGGCCATCGTAGCCCTGCGTCGGCAGCGCCTGACCGGCGCGCAGATCGCGCGCGACTTGGCCGTCTCGCCCGCCACCGTCAGCCGGGTCCTG
CGTCGGCACGGCCTGAGCCGCATCCGCGATCTCGAACCGCCGCCACCCGTTCAGCGCTACGAGCGTGAGCGGCCAGGCGAGTTGATCCACATCGACATCA
AGAAGCTCGGTCGCTTCGCACGAACCGGTCATCGCATCACCGGCGACCGCACCCGGCAGAGTTCAGGCCGCGGCATCGGCTGGGAGTTCCTGCACCTGGC
CATCGACGACCATTCTCGGCTGGCCTACTCCGAGATCCTGCCCGACGAGACCCGGGCCTCCTGCCTCGCCTTCCTCTTCAACGCCCTGCGGTTCTTCCGC
CGCCACGGTATCGGTGTCGAGCGCGTCATGACCGACAACGGGCCAGCCTTCAAATCCAAGCGCTACGCCAAGGCCTTGCGGCGCCTCCACATCGGCCACA
AGCGCACGCGACCCTACACGCCGAGGACCAACGGCAAGGTCGAGCGCTTCGTCCAGACCTCCCTGCGCGAATGGGCGTACGCCCGGGCCTACGACACCTC
CGAGCAGCGCCGCGCCGAACTGCCCGCCTTCTTGTTCCGCTACAACTGGCAGCGCCCACACGGCGGAATCAACGGCAGCACACCCATCAGCCGCATCCGC
CTGACAGAGGACAACCTGTTGAGCATCCACA
GCGCGTTTGACGCCGTCCGGTCGAGAGAGGCTGGTGCGGTTGGCCCGGAGTGGCCTCGCCCCGCAGGCGGTGGCTGAGAGGATGGGGGTCTGTACCAAGA
CGGTCCGCAAGTGGGTCGCCCGCTTTGAAGCCGAAGGCACCGCCGGGCTGCAGGATCGCTCCTCGCGGCCCCGCGGCCTGTACCGGCCGACCCCGGCCGA
GACACAGGCGGCCATCGTAGCCCTGCGTCGGCAGCGCCTGACCGGCGCGCAGATCGCGCGCGACTTGGCCGTCTCGCCCGCCACCGTCAGCCGGGTCCTG
CGTCGGCACGGCCTGAGCCGCATCCGCGATCTCGAACCGCCGCCACCCGTTCAGCGCTACGAGCGTGAGCGGCCAGGCGAGTTGATCCACATCGACATCA
AGAAGCTCGGTCGCTTCGCACGAACCGGTCATCGCATCACCGGCGACCGCACCCGGCAGAGTTCAGGCCGCGGCATCGGCTGGGAGTTCCTGCACCTGGC
CATCGACGACCATTCTCGGCTGGCCTACTCCGAGATCCTGCCCGACGAGACCCGGGCCTCCTGCCTCGCCTTCCTCTTCAACGCCCTGCGGTTCTTCCGC
CGCCACGGTATCGGTGTCGAGCGCGTCATGACCGACAACGGGCCAGCCTTCAAATCCAAGCGCTACGCCAAGGCCTTGCGGCGCCTCCACATCGGCCACA
AGCGCACGCGACCCTACACGCCGAGGACCAACGGCAAGGTCGAGCGCTTCGTCCAGACCTCCCTGCGCGAATGGGCGTACGCCCGGGCCTACGACACCTC
CGAGCAGCGCCGCGCCGAACTGCCCGCCTTCTTGTTCCGCTACAACTGGCAGCGCCCACACGGCGGAATCAACGGCAGCACACCCATCAGCCGCATCCGC
CTGACAGAGGACAACCTGTTGAGCATCCACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
902 bp | 300 aa | 134 | 1035 | + | No |
Chemistry : DDE
ORF sequence :
VRLARSGLAPQAVAERMGVCTKTVRKWVARFEAEGTAGLQDRSSRPRGLYRPTPAETQAAIVALRRQRLTGAQIARDLAVSPATVSRVLRRHGLSRIRDL
EPPPPVQRYERERPGELIHIDIKKLGRFARTGHRITGDRTRQSSGRGIGWEFLHLAIDDHSRLAYSEILPDETRASCLAFLFNALRFFRRHGIGVERVMT
DNGPAFKSKRYAKALRRLHIGHKRTRPYTPRTNGKVERFVQTSLREWAYARAYDTSEQRRAELPAFLFRYNWQRPHGGINGSTPISRIRLTEDNLLSIHS
EPPPPVQRYERERPGELIHIDIKKLGRFARTGHRITGDRTRQSSGRGIGWEFLHLAIDDHSRLAYSEILPDETRASCLAFLFNALRFFRRHGIGVERVMT
DNGPAFKSKRYAKALRRLHIGHKRTRPYTPRTNGKVERFVQTSLREWAYARAYDTSEQRRAELPAFLFRYNWQRPHGGINGSTPISRIRLTEDNLLSIHS
Blast result :
Comments
The end of the transposase is in the target site : CTAG. This IS has 16 copies in AM1 and all of them end with Tpase ORF.
ISMex2 is 71% aa similar to ISRel2.
ISMex2 is 71% aa similar to ISRel2.
References
1] Stéphane Vuilleumier et.al. Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PLoS ONE Submitted.
2] Ming-Chun Lee (2009) Direct submission.
2] Ming-Chun Lee (2009) Direct submission.