ISOan1
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DS990628 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 238 |
DNA section
IS Length : 1245 bp
Ends
IR Length : 15/16
IRL : CAGGGCAATCGCATGAACAATAACGATGACAAATGTTGTAGAGGCTGATT
IRR : CAGGGGAATCGCATGAGATTTAGGTGTTAATTATTTCGGCGAGGAAATCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGATCACCCCTC | AAAGAAGGGG | CGATAGGGTTTG | 10 |
DNA sequence
CAGGGCAATCGCATGAACAATAACGATGACAAATGTTGTAGAGGCTGATTCGATGGGTGATCTTCACTGGTTTAACGAGGTCATATGCCATGCCAAACCC
AAGTTCACCTGAGGTCCATCCCATTGAATTTCTTACGCATTTTTCAGAGATAAGCGATTCACGTCAAGAGGTTAAAGTGACTTACCCTTTGCCGGAAATA
CTCCTCTTAACCCTATGCGCTGTTTTGTCAGGTGCCAATGACTGGACGGCCATCTCGATATATGGGACCAAGAAACTGGGCTTTTTGAAGCGTTTTCTAC
CTTTTGCAGACGGGACACCGTCCCATGACCAACTTGGAAACATCTTTGCGGCCTTGGATGCCGAGGCGTTTCAGGCCTGTTTTATCGACTGGGTGGCCTC
CCTTAACAAGACGGTGACTGGAGTGGTCGCGATTGATGGGAAAACCTCTCGCCGCAGCCTGGATAAAGCTGGCGGCAAGGCCGCAATTCACATGATCTCG
GCCTGGAGTTCGGAATGGAATCTGACGCTGGCGCAACGGCAGGTGGACGGCAAGTCCAACGAGATAACGGCCATACCAGAACTGTTGGAACTGCTCACCC
TGAAGGGGGCTATTGTCACCATCGACGCTATGGGATGCCAACGCGAAATCGCCGCGAAGATCATCTCCAAAGAAGCAGACTACATCCTCGCTTTGAAGGG
TAATCAGGGCAGCCTACGCAAGGACACAGAATTATTCATGACGGAACAGGCGGCCGTAGATTATGACGACACAACAGTCACTTACCACGAAACGGTAGAG
AAGTCTCATGGCCGTATCGAAACAAGGAGGGTCACAGTGTGCACGGATATTGACTGGCTTAAAGCGGACCACAATTGGCCCGGTTTGAAAAGCATCGTTA
TGGTCCAGTACCACGCCATCCTGCAGGATAAAACGCGCGCCGAAACCCGCTATTACATTTCATCAATGACATCAGATGCTGAACATCACGCCAAAGCCAT
CCGTGACCACTGGGGAATAGAAAACGGGCTGCATTGGGTCATGGACATGGTGTTTCGCGACGATGAATGCCGTATCCGAAATGGCAATGCTCCAGCCAAT
TTTACGACCATAAAACACGTTGCAAGCAACATGCTGCGCTCCGTAAAGGGGAAGCATAGCCTGCGATCAAAGCGCCACATTGCATCATGGGATGATGATT
TCCTCGCCGAAATAATTAACACCTAAATCTCATGCGATTCCCCTG
AAGTTCACCTGAGGTCCATCCCATTGAATTTCTTACGCATTTTTCAGAGATAAGCGATTCACGTCAAGAGGTTAAAGTGACTTACCCTTTGCCGGAAATA
CTCCTCTTAACCCTATGCGCTGTTTTGTCAGGTGCCAATGACTGGACGGCCATCTCGATATATGGGACCAAGAAACTGGGCTTTTTGAAGCGTTTTCTAC
CTTTTGCAGACGGGACACCGTCCCATGACCAACTTGGAAACATCTTTGCGGCCTTGGATGCCGAGGCGTTTCAGGCCTGTTTTATCGACTGGGTGGCCTC
CCTTAACAAGACGGTGACTGGAGTGGTCGCGATTGATGGGAAAACCTCTCGCCGCAGCCTGGATAAAGCTGGCGGCAAGGCCGCAATTCACATGATCTCG
GCCTGGAGTTCGGAATGGAATCTGACGCTGGCGCAACGGCAGGTGGACGGCAAGTCCAACGAGATAACGGCCATACCAGAACTGTTGGAACTGCTCACCC
TGAAGGGGGCTATTGTCACCATCGACGCTATGGGATGCCAACGCGAAATCGCCGCGAAGATCATCTCCAAAGAAGCAGACTACATCCTCGCTTTGAAGGG
TAATCAGGGCAGCCTACGCAAGGACACAGAATTATTCATGACGGAACAGGCGGCCGTAGATTATGACGACACAACAGTCACTTACCACGAAACGGTAGAG
AAGTCTCATGGCCGTATCGAAACAAGGAGGGTCACAGTGTGCACGGATATTGACTGGCTTAAAGCGGACCACAATTGGCCCGGTTTGAAAAGCATCGTTA
TGGTCCAGTACCACGCCATCCTGCAGGATAAAACGCGCGCCGAAACCCGCTATTACATTTCATCAATGACATCAGATGCTGAACATCACGCCAAAGCCAT
CCGTGACCACTGGGGAATAGAAAACGGGCTGCATTGGGTCATGGACATGGTGTTTCGCGACGATGAATGCCGTATCCGAAATGGCAATGCTCCAGCCAAT
TTTACGACCATAAAACACGTTGCAAGCAACATGCTGCGCTCCGTAAAGGGGAAGCATAGCCTGCGATCAAAGCGCCACATTGCATCATGGGATGATGATT
TCCTCGCCGAAATAATTAACACCTAAATCTCATGCGATTCCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1110 bp | 389 aa | 117 | 1226 | + | No |
Chemistry : Unknow
ORF sequence :
MIFTGLTRSYAMPNPSSPEVHPIEFLTHFSEISDSRQEVKVTYPLPEILLLTLCAVLSGANDWTAISIYGTKKLGFLKRFLPFADGTPSHDQLGNIFAAL
DAEAFQACFIDWVASLNKTVTGVVAIDGKTSRRSLDKAGGKAAIHMISAWSSEWNLTLAQRQVDGKSNEITAIPELLELLTLKGAIVTIDAMGCQREIAA
KIISKEADYILALKGNQGSLRKDTELFMTEQAAVDYDDTTVTYHETVEKSHGRIETRRVTVCTDIDWLKADHNWPGLKSIVMVQYHAILQDKTRAETRYY
ISSMTSDAEHHAKAIRDHWGIENGLHWVMDMVFRDDECRIRNGNAPANFTTIKHVASNMLRSVKGKHSLRSKRHIASWDDDFLAEIINT
DAEAFQACFIDWVASLNKTVTGVVAIDGKTSRRSLDKAGGKAAIHMISAWSSEWNLTLAQRQVDGKSNEITAIPELLELLTLKGAIVTIDAMGCQREIAA
KIISKEADYILALKGNQGSLRKDTELFMTEQAAVDYDDTTVTYHETVEKSHGRIETRRVTVCTDIDWLKADHNWPGLKSIVMVQYHAILQDKTRAETRYY
ISSMTSDAEHHAKAIRDHWGIENGLHWVMDMVFRDDECRIRNGNAPANFTTIKHVASNMLRSVKGKHSLRSKRHIASWDDDFLAEIINT
Blast result :
Comments
ISOan1 is 59% aa similar to ISAcma2.
References
1] ISfinder annotation (2009)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.