ISOt4
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Orientia tsutsugamushi | Orientia tsutsugamushi Ikeda |
DNA section
IS Length : 988 bp
Ends
IR Length : 15/18
IRL : ACGCCAGATTAGGATAAGTGGAAATATGAAATGTAGAGAATAAGAGGTAT
IRR : ACGTCAATTTAGGATAAGGAGTCAAGAGAAGAAGAAGAGATAAGATGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAGTTTAGCA | TATAA | ATCTAAATAT | 5 |
DNA sequence
ACGCCAGATTAGGATAAGTGGAAATATGAAATGTAGAGAATAAGAGGTATACAAAGAGAGAATGTTGAGTTATAAAAAAATTTTAAATAAACAAGGAATA
ACACAACATGAAAAAATGTATTATAACAGTATACTATTTAATAGACAATTTTTACAAGATATATCAAGAGTGGGAGAGCAAAGAGATTAATACCAAGTAG
TAATCAAAAGAACAGAGATGAGAAGTTGTCCTTAGATGAGTTATTAACAATAGCGATATATTTTTATGTATCTCAATGCAAAGATTGTAAAAATTATTAT
CTATATTACTTGAGTTATAAGTATAAAGGATACTTTTGCTTACCAAGCTATAGTAGAATAATACAACTGTGGCCTAGAATGTTGCTACCATTAGCAATAT
TAATGCATTGTCTCAAAGGAGATGAGACTGGTATATTTACATCGATTCTACAAAGTTAGCAATTTGTCATAATAAACGTACCTCCAGCAATAGAGTTTTT
AACAAAATTTCTAAAATTGGTAAAAGTAGTTATGGCTCATTCTTAGACTTTAAGTTACATCTTATAATCAATAATAAAGGCGAAATAATGTCAGTTAAAA
TTACTAAAGGCAATAAAAGTGACATATCTGTAGCTTCAGTTTTTTCTGAAGGCTTATCTGGTAAATTGTTTGGTGATAAAGCTTACATATCTAAAGAGTT
ATTTCATCAACTGCTGACTAATGGTCTACGTTTATTTACTAATCTTGGTAAAGATATGAAAACATATTTATTGGACATACAAGATAATCGGTTATTAAAT
AAACGTTCTTTAATTGAGTCTGTCTTTAATGTACTAAAAAAACATATGCTTTTAGAGCATACTAGACACCGTTCTCATCTTAATTTTTTTGTTCATATAA
TTGCTTCTCTTGCTAGTTATTCTATCTCTAAACTTAATCCTCATCTTATCTCTTCTTCTTCTCTTGACTCCTTATCCTAAATTGACGT
ACACAACATGAAAAAATGTATTATAACAGTATACTATTTAATAGACAATTTTTACAAGATATATCAAGAGTGGGAGAGCAAAGAGATTAATACCAAGTAG
TAATCAAAAGAACAGAGATGAGAAGTTGTCCTTAGATGAGTTATTAACAATAGCGATATATTTTTATGTATCTCAATGCAAAGATTGTAAAAATTATTAT
CTATATTACTTGAGTTATAAGTATAAAGGATACTTTTGCTTACCAAGCTATAGTAGAATAATACAACTGTGGCCTAGAATGTTGCTACCATTAGCAATAT
TAATGCATTGTCTCAAAGGAGATGAGACTGGTATATTTACATCGATTCTACAAAGTTAGCAATTTGTCATAATAAACGTACCTCCAGCAATAGAGTTTTT
AACAAAATTTCTAAAATTGGTAAAAGTAGTTATGGCTCATTCTTAGACTTTAAGTTACATCTTATAATCAATAATAAAGGCGAAATAATGTCAGTTAAAA
TTACTAAAGGCAATAAAAGTGACATATCTGTAGCTTCAGTTTTTTCTGAAGGCTTATCTGGTAAATTGTTTGGTGATAAAGCTTACATATCTAAAGAGTT
ATTTCATCAACTGCTGACTAATGGTCTACGTTTATTTACTAATCTTGGTAAAGATATGAAAACATATTTATTGGACATACAAGATAATCGGTTATTAAAT
AAACGTTCTTTAATTGAGTCTGTCTTTAATGTACTAAAAAAACATATGCTTTTAGAGCATACTAGACACCGTTCTCATCTTAATTTTTTTGTTCATATAA
TTGCTTCTCTTGCTAGTTATTCTATCTCTAAACTTAATCCTCATCTTATCTCTTCTTCTTCTCTTGACTCCTTATCCTAAATTGACGT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
755 bp | 251 aa | 226 | 980 | + | Yes |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
The protein is degenerate, there is a frameshift at position 436 ( ponctual mutation).
The transposase of ISOt4 is 64% aa similar to ISPasp2.
The transposase of ISOt4 is 64% aa similar to ISPasp2.
References
1]Nakayama,K., Yamashita,A., Kurokawa,K., et al. (2008) DNA Res.
2]Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2005) Direct submission GenBank.
2]Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2005) Direct submission GenBank.