ISMysp6
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008146 | ND | Mycobacterium sp. | Mycobacterium sp. MCS |
DNA section
IS Length : 1077 bp
Ends
IR Length : 19/21
IRL : TGTACCGAGACAGGACGTTGGTAGCGGGCGTGTTGGCTTGATGTGAGGAG
IRR : TGTACCGAGTCATGAGGTTGGTGTCAGTCGGCTGATCGGTGGGAGGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCTGCCGGCA | TCTAGC | GGCTGTCATCCCA | 6 |
DNA sequence
TGTACCGAGACAGGACGTTGGTAGCGGGCGTGTTGGCTTGATGTGAGGAGAACCTCCGGGTGGGGTGTGGCTTGTCTAGGTCCATACCGTCCGGAGGTTC
TCGTGTCCCACCGTAATGCTCGTACGACGTTTCATGGTCGGCTGTTGATGGTGCGCCGCCATCAGGCCGGTTGGCCCAAGGCTCATATCGCCAGTGCGAT
GGGGGTGTCACGCAAGTGCGTGCACACCTGGATCAGCCGGTTCGAGGCCGACGGCGAGGCCGGGCTGATCGACCGCTCCTCGCGGCCCCACACCTCGCCA
ATGCGCACCGCGCAGCGGCTGGAGAACCAAATCGTGGCCTGGCGGCGCCGTCACCGTTGCGGCCCGGAGGAAATCGGCGCGAAGTTGGGGGTGTCGGCTC
GGACAGTGTCCCGGGTATTGCACCGCCGTGGTGCGCCCTACCTGCGGGATTGCGATCCGATGACCGGACAGGTCATCCGCGCCTCAAAGTCCACGGCGGT
GCGTTATGAGCGCGGCCGACCCGGCGAACTGGTCCACATGGACGTTAAGAAATTGGGCCGTATCCCTGACGGCGGTGGCTGGCGAGCCCACGGTCGAGGC
TGTGCACCTGACCGCAAGCGGTTGCGCGGCAATGGATTCGACTACATCCACTCACTTGTCGACGATCACAGCCGGCTGGCGTACTCCGAAATCCTGCCCG
ACGAGAAAGGCTCCACCTGCGCCGGGTTCCTCGAACGCGCAGCCCACTACTTCCGCGCCCACGGCATCACCACCATCGAGCAGGTCATGACCGACAACGC
CTGGGCCTACCGGTATTCCCTGCGCGATGTCTGCACCCAGCTCGGTGCCCGCCAAATCTTCATCAGGCCCCACTGCCCCTGGCAGAACGGCAAGGTAGAG
CGGCTCAACCGAACCCTGCAGACCGAATGGGCCTACAAGCGGGTCTTCACCTCCAATGCCCACCGCGCCGCCGCGCTTGCGCCCTGGCTCAAGCACTACA
ACACTCAACGCCGTCACAGTGCACTCGGCGGCCTCCCACCGATCAGCCGACTGACACCAACCTCATGACTCGGTACA
TCGTGTCCCACCGTAATGCTCGTACGACGTTTCATGGTCGGCTGTTGATGGTGCGCCGCCATCAGGCCGGTTGGCCCAAGGCTCATATCGCCAGTGCGAT
GGGGGTGTCACGCAAGTGCGTGCACACCTGGATCAGCCGGTTCGAGGCCGACGGCGAGGCCGGGCTGATCGACCGCTCCTCGCGGCCCCACACCTCGCCA
ATGCGCACCGCGCAGCGGCTGGAGAACCAAATCGTGGCCTGGCGGCGCCGTCACCGTTGCGGCCCGGAGGAAATCGGCGCGAAGTTGGGGGTGTCGGCTC
GGACAGTGTCCCGGGTATTGCACCGCCGTGGTGCGCCCTACCTGCGGGATTGCGATCCGATGACCGGACAGGTCATCCGCGCCTCAAAGTCCACGGCGGT
GCGTTATGAGCGCGGCCGACCCGGCGAACTGGTCCACATGGACGTTAAGAAATTGGGCCGTATCCCTGACGGCGGTGGCTGGCGAGCCCACGGTCGAGGC
TGTGCACCTGACCGCAAGCGGTTGCGCGGCAATGGATTCGACTACATCCACTCACTTGTCGACGATCACAGCCGGCTGGCGTACTCCGAAATCCTGCCCG
ACGAGAAAGGCTCCACCTGCGCCGGGTTCCTCGAACGCGCAGCCCACTACTTCCGCGCCCACGGCATCACCACCATCGAGCAGGTCATGACCGACAACGC
CTGGGCCTACCGGTATTCCCTGCGCGATGTCTGCACCCAGCTCGGTGCCCGCCAAATCTTCATCAGGCCCCACTGCCCCTGGCAGAACGGCAAGGTAGAG
CGGCTCAACCGAACCCTGCAGACCGAATGGGCCTACAAGCGGGTCTTCACCTCCAATGCCCACCGCGCCGCCGCGCTTGCGCCCTGGCTCAAGCACTACA
ACACTCAACGCCGTCACAGTGCACTCGGCGGCCTCCCACCGATCAGCCGACTGACACCAACCTCATGACTCGGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1002 bp | 333 aa | 67 | 1068 | + | No |
Chemistry : DDE
ORF sequence :
MACLGPYRPEVLVSHRNARTTFHGRLLMVRRHQAGWPKAHIASAMGVSRKCVHTWISRFEADGEAGLIDRSSRPHTSPMRTAQRLENQIVAWRRRHRCGP
EEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVKKLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDD
HSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQVMTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHR
AAALAPWLKHYNTQRRHSALGGLPPISRLTPTS
EEIGAKLGVSARTVSRVLHRRGAPYLRDCDPMTGQVIRASKSTAVRYERGRPGELVHMDVKKLGRIPDGGGWRAHGRGCAPDRKRLRGNGFDYIHSLVDD
HSRLAYSEILPDEKGSTCAGFLERAAHYFRAHGITTIEQVMTDNAWAYRYSLRDVCTQLGARQIFIRPHCPWQNGKVERLNRTLQTEWAYKRVFTSNAHR
AAALAPWLKHYNTQRRHSALGGLPPISRLTPTS
Blast result :
Comments
ISMysp6 is 87% aa similar to ISMyma4.
References
1] ISfinder annotation (2008)
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J., Sims,R.C. and Richardson,P. (2006) Direct submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J., Sims,R.C. and Richardson,P. (2006) Direct submission GenBank.