ISMno4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011894 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 |
DNA section
IS Length : 1385 bp
Ends
IR Length : 17/23
IRL : GAATTACACGCTCTATGGGGACATGAGCGCCCGCGCCAACGTTGCAGGGA
IRR : GTAATTACCCACGCCTGTGATGGCGGATTCAGGCGCCGATGGTCTGGAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTTCTCCTC | GTAGTTTACG | 0 |
DNA sequence
GAATTACACGCTCTATGGGGACATGAGCGCCCGCGCCAACGTTGCAGGGATCGGATTTCGCTGATTCCCTCGTGGGATGAGCCGCCGCGAGCTTGAGCGC
CTGAGCAAGGAGGAGCTGATCGAGCTGGTGCTGCGGCTGCAGCGCCCAGAGAAGACCTCGCGCACCTCCTCCAAGCCGCCCTCCACCGATCGCAAGGAGC
GGCGCGAGCAGGCCAGACCCGGCGGCGCCAAGCCCGGCCACGAAGGCCACAGCCGGGTGATCAGCGGGGATCCCGATGCGGTCGTCGAGCATCGTCCGGA
TCGCTGCTCGTGCTGTGGCGGCGCTCTGCACGGTGATCTTCCCGCCGAGGTCGTCAGCGTCGCCGAGCAGGTCGAGTTGCCCGAGGTGACGCCGATCGTC
ACCCAGCATCAGCGGCTCGCGGTTCTCTGCCCGTCGTGCGGGGCTCACGTCGTCGCTCCGGTGCCTTCGGCCGCGCGCGGCACTCCGTTCGGCCCGCGGC
TGCACGCGGTGGCGACCTACCTCAAGACCTTCCAGGCGCTCTCGTATGAGCGGCTGCAGGCGGCGCTGTCGGATTTGTTCGGGCTCACGCTCAGCCAGGG
CGGGCTGATGAACATGCTCCGCCGCGCACAGGGCTACTTCCGTCCTGGCCGCGAGGCGGCCGTGTCGGCGCTGCGCCGGGCCGCGGTCGTCGCCTCCGAC
GAGACGGGCGTCCGGATCGAGGGCTGCACCGCCTACCATTGGGTGTTCCGCTCAGCCGAGGCGGTGGTCCATCACGCCTCCCCGACGCGCGGCGCCGTCG
TGGTGCACGAGATGATGGACGGCCATCGGCCCGTGGTGTGGATCTCTGATCGCTACACCGCCCAACAAGGCCACGCGGCCAAACATCAGACCTGCCTGGC
GCATCTGGCCCGTGACGTCGCCTATGCGGTCGAGGTCAGCGACGACCCGGGGCCACTTCGCCTGCAGCTCTGGCTGCAGGCGGTGTTCGCGCTGGCCGAG
CGCGTCACCGACTTGGCGGCCTCGACGCTCTCGGCCAAGCGCCGGGCGCTGGAGCGGCGGCTGTCGGAGATCCTGTCCGCCCCGAGCCGCTGCGATCTGA
CCCGCGATCTGCAGGCCAAGATCGGCCGCGCCCGCGATCAGCTCCTGGTCTTCCTCGATCATCCCGGCACAGTCGAGATTACCAACAACGGCTGCGAGCG
CCTGCTGCGCCCGGCTGTCGTGCAGCGCAAGGTCACCAACGGCTACCGTGCGAGGTGGGCGGCCAACGGAGAGGCCGATCTCCGCACCGTCGTCGACACA
GCCCGCCTCACCGGCGCCAGGCCGTTCGCCACCATCCTCCAGACCATCGGCGCCTGAATCCGCCATCACAGGCGTGGGTAATTAC
CTGAGCAAGGAGGAGCTGATCGAGCTGGTGCTGCGGCTGCAGCGCCCAGAGAAGACCTCGCGCACCTCCTCCAAGCCGCCCTCCACCGATCGCAAGGAGC
GGCGCGAGCAGGCCAGACCCGGCGGCGCCAAGCCCGGCCACGAAGGCCACAGCCGGGTGATCAGCGGGGATCCCGATGCGGTCGTCGAGCATCGTCCGGA
TCGCTGCTCGTGCTGTGGCGGCGCTCTGCACGGTGATCTTCCCGCCGAGGTCGTCAGCGTCGCCGAGCAGGTCGAGTTGCCCGAGGTGACGCCGATCGTC
ACCCAGCATCAGCGGCTCGCGGTTCTCTGCCCGTCGTGCGGGGCTCACGTCGTCGCTCCGGTGCCTTCGGCCGCGCGCGGCACTCCGTTCGGCCCGCGGC
TGCACGCGGTGGCGACCTACCTCAAGACCTTCCAGGCGCTCTCGTATGAGCGGCTGCAGGCGGCGCTGTCGGATTTGTTCGGGCTCACGCTCAGCCAGGG
CGGGCTGATGAACATGCTCCGCCGCGCACAGGGCTACTTCCGTCCTGGCCGCGAGGCGGCCGTGTCGGCGCTGCGCCGGGCCGCGGTCGTCGCCTCCGAC
GAGACGGGCGTCCGGATCGAGGGCTGCACCGCCTACCATTGGGTGTTCCGCTCAGCCGAGGCGGTGGTCCATCACGCCTCCCCGACGCGCGGCGCCGTCG
TGGTGCACGAGATGATGGACGGCCATCGGCCCGTGGTGTGGATCTCTGATCGCTACACCGCCCAACAAGGCCACGCGGCCAAACATCAGACCTGCCTGGC
GCATCTGGCCCGTGACGTCGCCTATGCGGTCGAGGTCAGCGACGACCCGGGGCCACTTCGCCTGCAGCTCTGGCTGCAGGCGGTGTTCGCGCTGGCCGAG
CGCGTCACCGACTTGGCGGCCTCGACGCTCTCGGCCAAGCGCCGGGCGCTGGAGCGGCGGCTGTCGGAGATCCTGTCCGCCCCGAGCCGCTGCGATCTGA
CCCGCGATCTGCAGGCCAAGATCGGCCGCGCCCGCGATCAGCTCCTGGTCTTCCTCGATCATCCCGGCACAGTCGAGATTACCAACAACGGCTGCGAGCG
CCTGCTGCGCCCGGCTGTCGTGCAGCGCAAGGTCACCAACGGCTACCGTGCGAGGTGGGCGGCCAACGGAGAGGCCGATCTCCGCACCGTCGTCGACACA
GCCCGCCTCACCGGCGCCAGGCCGTTCGCCACCATCCTCCAGACCATCGGCGCCTGAATCCGCCATCACAGGCGTGGGTAATTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1281 bp | 426 aa | 77 | 1357 | + | No |
Chemistry : DDE
ORF sequence :
MSRRELERLSKEELIELVLRLQRPEKTSRTSSKPPSTDRKERREQARPGGAKPGHEGHSRVISGDPDAVVEHRPDRCSCCGGALHGDLPAEVVSVAEQVE
LPEVTPIVTQHQRLAVLCPSCGAHVVAPVPSAARGTPFGPRLHAVATYLKTFQALSYERLQAALSDLFGLTLSQGGLMNMLRRAQGYFRPGREAAVSALR
RAAVVASDETGVRIEGCTAYHWVFRSAEAVVHHASPTRGAVVVHEMMDGHRPVVWISDRYTAQQGHAAKHQTCLAHLARDVAYAVEVSDDPGPLRLQLWL
QAVFALAERVTDLAASTLSAKRRALERRLSEILSAPSRCDLTRDLQAKIGRARDQLLVFLDHPGTVEITNNGCERLLRPAVVQRKVTNGYRARWAANGEA
DLRTVVDTARLTGARPFATILQTIGA
LPEVTPIVTQHQRLAVLCPSCGAHVVAPVPSAARGTPFGPRLHAVATYLKTFQALSYERLQAALSDLFGLTLSQGGLMNMLRRAQGYFRPGREAAVSALR
RAAVVASDETGVRIEGCTAYHWVFRSAEAVVHHASPTRGAVVVHEMMDGHRPVVWISDRYTAQQGHAAKHQTCLAHLARDVAYAVEVSDDPGPLRLQLWL
QAVFALAERVTDLAASTLSAKRRALERRLSEILSAPSRCDLTRDLQAKIGRARDQLLVFLDHPGTVEITNNGCERLLRPAVVQRKVTNGYRARWAANGEA
DLRTVVDTARLTGARPFATILQTIGA
Blast result :
Comments
ISMno4 is 88% aa similar to ISMno2.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.