ISMno3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011892 | ND | Methylobacterium nodulans | Methylobacterium nodulans ORS 2060 plasmid pMNOD01 |
DNA section
IS Length : 1364 bp
Ends
IR Length : 22/28
IRL : GTAATTACCCACGCCGCTTGCGCGGGGTGGATTTCGCTGCTTCCCTCGTG
IRR : GTATTTACCCACGCCCGTGACAGCGGGGGTTAGGCGCCGAGAGTCTTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCACAGCT | GCTGATCG | TTTCCCGTTC | 8 |
DNA sequence
GTAATTACCCACGCCGCTTGCGCGGGGTGGATTTCGCTGCTTCCCTCGTGGGATGGGCCGCCGCGAGCTTGAGCGCCTGAGCAAGGCGGAGCTGATCGAG
CTGGTGCTGCGGCTGCAGCGCCCAGACAAGACCTCGCGCACCTCCTCCACGCCGCCCTCGACCGATCGCAAGGAGCGGCGCGAGCAGGCCAAACCTGGCG
GCGCCAAGCCGGGTCACGAGGGGCACAGTCGGGTGAGCAGCCAGATCCCGGATGAGGTGGTCGCGCATCGCCCGGGTCACTGCTCCTGCGGTGGAGGCGT
GTTGGCTCCGGACCTTCCGGCCGAGATCGTCAGCTTGTCCGAGCGGATCGAGCTGCCCGAGGTCGCGCCAGTCGTCACCCAACACCAGCAACTGGCCGTG
CGCTGTCTCGCCTGTGGTGCACGGGTCCTCGCTCCGGTGCCGCAGGCCGCGCGCGGCACCCCGTTTGGCCCGCGCCTGCACGCGGTGGCTGTCTACCTGA
AGACCTTCCAGGCGCTGTCCTACGAGCGGCTACAGGCCCTGTTGGCGGACCTGTTCGGGCTGACGCTCAGCCAGGGCGGCCTGATGAATCTGCTCCGCCG
CGCGCAAGGGCGGTTCCGGCCCGGCCGCGCGGCGGCCGTGTCGGCGCTGCGCCGGGCTGCGGTCGTCGCCTCAGACGAGACTGGCGTGCGCATCGAGGGC
ACGAACAGCTACCATTGGGGCTTCCACTCGGCTGATGCGGTGGTCCATCACGCCGCCCCGACGCGGGTGGCCTGCGTCATCCGAGAGATGATGGACGGGC
ACCGGCCCGCGGTGTGGCTGTCGGACCGCTCCACGGCGCAGCAAGGCCATGGCGTGCGCCACCCAACCTGCCTGGCGCATCTGGTGCGCGACATCGCTTA
TGCGGTCGAGGCCAGCGAGGATCCCGTGCCGCTGCGCCTGCAGCTGTGGCTGGGATCCGTGTTCAGCTTGGCGGAGCGCGTCACGGATCTCGCCGCTTCA
ACCTTGGCGGCCAAGCGCCGGACGCTGGAGCGGCGGCTGGCCGAGATCCTGGCCGTCCCAAGCCGCTGCGACCTGACGCGAGCCTTGCAGGCCAAGATCG
GCCGTGCGCGCGACCAGCTTCTGGTCTTCCTCGCCCATCCCGGCCAGGTCGCGGTCACAAACAACGGCTGTAAGCGGGCCCTGCGCCCGGCGGTGGTGCA
GCGGAAGGTGACGAACGGCTATCGGGCGATGTGGGCGGCCGAAGGCGAGGCCGACGTGCGCACGGTCGTCGACACAGCCCGTCTGTCGGGTGCTGGCACC
TTTTCGGCACGATCCTCAAGACTCTCGGCGCCTAACCCCCGCTGTCACGGGCGTGGGTAAATAC
CTGGTGCTGCGGCTGCAGCGCCCAGACAAGACCTCGCGCACCTCCTCCACGCCGCCCTCGACCGATCGCAAGGAGCGGCGCGAGCAGGCCAAACCTGGCG
GCGCCAAGCCGGGTCACGAGGGGCACAGTCGGGTGAGCAGCCAGATCCCGGATGAGGTGGTCGCGCATCGCCCGGGTCACTGCTCCTGCGGTGGAGGCGT
GTTGGCTCCGGACCTTCCGGCCGAGATCGTCAGCTTGTCCGAGCGGATCGAGCTGCCCGAGGTCGCGCCAGTCGTCACCCAACACCAGCAACTGGCCGTG
CGCTGTCTCGCCTGTGGTGCACGGGTCCTCGCTCCGGTGCCGCAGGCCGCGCGCGGCACCCCGTTTGGCCCGCGCCTGCACGCGGTGGCTGTCTACCTGA
AGACCTTCCAGGCGCTGTCCTACGAGCGGCTACAGGCCCTGTTGGCGGACCTGTTCGGGCTGACGCTCAGCCAGGGCGGCCTGATGAATCTGCTCCGCCG
CGCGCAAGGGCGGTTCCGGCCCGGCCGCGCGGCGGCCGTGTCGGCGCTGCGCCGGGCTGCGGTCGTCGCCTCAGACGAGACTGGCGTGCGCATCGAGGGC
ACGAACAGCTACCATTGGGGCTTCCACTCGGCTGATGCGGTGGTCCATCACGCCGCCCCGACGCGGGTGGCCTGCGTCATCCGAGAGATGATGGACGGGC
ACCGGCCCGCGGTGTGGCTGTCGGACCGCTCCACGGCGCAGCAAGGCCATGGCGTGCGCCACCCAACCTGCCTGGCGCATCTGGTGCGCGACATCGCTTA
TGCGGTCGAGGCCAGCGAGGATCCCGTGCCGCTGCGCCTGCAGCTGTGGCTGGGATCCGTGTTCAGCTTGGCGGAGCGCGTCACGGATCTCGCCGCTTCA
ACCTTGGCGGCCAAGCGCCGGACGCTGGAGCGGCGGCTGGCCGAGATCCTGGCCGTCCCAAGCCGCTGCGACCTGACGCGAGCCTTGCAGGCCAAGATCG
GCCGTGCGCGCGACCAGCTTCTGGTCTTCCTCGCCCATCCCGGCCAGGTCGCGGTCACAAACAACGGCTGTAAGCGGGCCCTGCGCCCGGCGGTGGTGCA
GCGGAAGGTGACGAACGGCTATCGGGCGATGTGGGCGGCCGAAGGCGAGGCCGACGTGCGCACGGTCGTCGACACAGCCCGTCTGTCGGGTGCTGGCACC
TTTTCGGCACGATCCTCAAGACTCTCGGCGCCTAACCCCCGCTGTCACGGGCGTGGGTAAATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1308 bp | 435 aa | 53 | 1360 | + | No |
Chemistry : DDE
ORF sequence :
MGRRELERLSKAELIELVLRLQRPDKTSRTSSTPPSTDRKERREQAKPGGAKPGHEGHSRVSSQIPDEVVAHRPGHCSCGGGVLAPDLPAEIVSLSERIE
LPEVAPVVTQHQQLAVRCLACGARVLAPVPQAARGTPFGPRLHAVAVYLKTFQALSYERLQALLADLFGLTLSQGGLMNLLRRAQGRFRPGRAAAVSALR
RAAVVASDETGVRIEGTNSYHWGFHSADAVVHHAAPTRVACVIREMMDGHRPAVWLSDRSTAQQGHGVRHPTCLAHLVRDIAYAVEASEDPVPLRLQLWL
GSVFSLAERVTDLAASTLAAKRRTLERRLAEILAVPSRCDLTRALQAKIGRARDQLLVFLAHPGQVAVTNNGCKRALRPAVVQRKVTNGYRAMWAAEGEA
DVRTVVDTARLSGAGTFSARSSRLSAPNPRCHGRG
LPEVAPVVTQHQQLAVRCLACGARVLAPVPQAARGTPFGPRLHAVAVYLKTFQALSYERLQALLADLFGLTLSQGGLMNLLRRAQGRFRPGRAAAVSALR
RAAVVASDETGVRIEGTNSYHWGFHSADAVVHHAAPTRVACVIREMMDGHRPAVWLSDRSTAQQGHGVRHPTCLAHLVRDIAYAVEASEDPVPLRLQLWL
GSVFSLAERVTDLAASTLAAKRRTLERRLAEILAVPSRCDLTRALQAKIGRARDQLLVFLAHPGQVAVTNNGCKRALRPAVVQRKVTNGYRAMWAAEGEA
DVRTVVDTARLSGAGTFSARSSRLSAPNPRCHGRG
Blast result :
Comments
ISMno3 is 90% aa similar to ISMno2.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.