ISMasp4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008576 | ND | Magnetococcus sp. | Magnetococcus sp. MC-1 |
DNA section
IS Length : 1969 bp
Ends
IR Length : 19
IRL : GTAACCGTTCAGAGACCCCTCGTTCAGTGAGGATGTTCACCGTTTGAGAA
IRR : GTAACCGTTCAGAGACCCCGATATCAAGCGGCTACTGGAGCCGGTAACGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTAAACTCA | GTCACATG | TGCTACCTGC | 8 |
GTTATGCATT | CACTGGTT | TGTCTCAGGC | 8 |
GGCATTCTGT | GGTTTGCT | AGGTTTCCCC | 8 |
CTATATTCCC | GTTTCTAC | AGGTTTGACC | 8 |
GCAAAAAACT | GTCTGTTT | TGGTGTTGCC | 8 |
GTTTTTTTGC | CACCTACC | CCCCTCTAGA | 8 |
GGGTATGTTT | CCCTAAACGG | 0 |
DNA sequence
GTAACCGTTCAGAGACCCCTCGTTCAGTGAGGATGTTCACCGTTTGAGAAGGAGTCAACTGCCGGGAATAGCGCCAATTTTGTTTGACCATGGCAAAGAA
TATCCTTGACACGATTTTCGTCGAAAATGTGAAATTTCAGAAGGAGAGTGCGATCCGATCTGTTTTTGCCTATCAAAGCCTTGAGGAGAGTTCTGGCGGG
TTTTCAGCTGTGGCGCCCACCCCCGGGTACGAGCGAATTTTTGCGCTGGATCCAATGGGGCGCAGAAGCGCAAAAATCTCTTCCTGGAAACCCGTGTTAT
CATGTGTGCGAGGATTCATTCACCGGCGATGATGTGGTGCGCGAACCATGAAGCTTTCAGATCACGACCTGCTCCAGATTGATGAGGAATATCTCTCCTC
ACTATCGTCTGCAGAGTTACTGGCCGTCAGCCGGAAAATGTTGGAGGATCTCAAGGAATCTCGTGAGCGTTTGAACCGAACACCCGACAACAGTTCCCAG
CCGCCCAGCAGTCGTCCGGCGTACCTTGGGATTCCAGTTGAGCAAGACGAAACGCTTTCGGATGAGGATGAAGAGGACGTTTCGCCGGTGGAGAAGAAGG
GAACCGATGATGCGGATGGAGATGATTCACCAGGGCCATCCGGCAGTTCTACTCCCTCTGCTCCAGGAAATGGTAAGTCGGATTCCTCAGGCAAGAAGCC
GAAAGGCAGGGCTGGGAAGCCAGTTGGGGCCAAGGGATTCGGCAGAACGCAGATAATTCCGATTCGGAGTACCGTGGTTCATCGAGCGGAAACGTGTGCT
GCCTGCGATGCTGCCCTTCCCTTGGATGCTCGATTTACAGCTCGAATCGGCTATGTGACCATCGATCTGATAAGGGGTGCCCCGGATCAGCCTGGATTGA
GGCTAGAGGGGACCAAGCACCTTTTTGGGGAAGTTGCCTGTAGATGCGGCCATATTTCATGTACCGGTCCCGGCACAGGGGATAGACTTGAGATTGCAGG
ACGCAAAACCGCAACCAGTTTGAGTGAATGGCGTATTGTCGGCCCCATGTTGGCTGCTTTCATTGTTGCGCTCGCAAAACGGATGCGGTTGTCTCGCTCC
AAGGTTCAGGAGTTTTTGATCGATTGGTTCGGCCTGGAGTTGAGTGTCGGGACCATCGACAATTGCATACGTGAGGTCGGACTGGCTGCCGCCCCTGTTC
AGGATGAACTGATTGCCGAACTTCGTGCATCCGCTCTGGCTCATGTAGACGAAACGCCTTGGAAGCAAAAAGGTCAAGCTTTGTGGCTCTGGGTTTTCGC
GACGGCAAATACGGTCTTGTTTTGCGTGGGACGCCGGACTCGACAAATGGTCCTTGATATCCTGACCGAGGAATATGCAGGCTGGCTAATGAGCGATGGA
CTCATGAACTACCGGATTTTCTCCAGGCGGCTGCGCTGCTGGGCGCACTTGATCCGAAAAGCCAAGGGGTTGTCGACAAGCCTGGATAAAGAGAGCAAAC
GATTCGGCTCCAGGGTATTGGAGGTCCTGGAATACATGGTCGAAGAGGTCAAAGATGGATCGGATCCGCCAGCTGCCGAGTCGATTTTGGAAGAATTCCA
GGGATACTGCGAATTGTACAGAGATTATCCCCCGTCCGAGAAAGTTCGCAGCCTTGCCGTTGAGCTTCTCAATGACTGGGATGTTATCTGGCAACCTGTG
AGAGTTCCAGGGCTGCCGCTGACCAACAACGATGCGGAGCGGGCTCTGCGCCACTGGGTCATTGCGCGTCTGATCAGCCACGGAACTCGTACGGCAGAAG
GGAGTCGGGTATTGGGTGTGCTGGCTAGCGTCATCGAAACTTGCCGATTGCGGAACGTGTCTCCCTGGGACTATCTTGCTGAGGTGATTGCTGAACGGAG
AAAGGGAAACCTCGTACCGCCGTTACCGGCTCCAGTAGCCGCTTGATATCGGGGTCTCTGAACGGTTAC
TATCCTTGACACGATTTTCGTCGAAAATGTGAAATTTCAGAAGGAGAGTGCGATCCGATCTGTTTTTGCCTATCAAAGCCTTGAGGAGAGTTCTGGCGGG
TTTTCAGCTGTGGCGCCCACCCCCGGGTACGAGCGAATTTTTGCGCTGGATCCAATGGGGCGCAGAAGCGCAAAAATCTCTTCCTGGAAACCCGTGTTAT
CATGTGTGCGAGGATTCATTCACCGGCGATGATGTGGTGCGCGAACCATGAAGCTTTCAGATCACGACCTGCTCCAGATTGATGAGGAATATCTCTCCTC
ACTATCGTCTGCAGAGTTACTGGCCGTCAGCCGGAAAATGTTGGAGGATCTCAAGGAATCTCGTGAGCGTTTGAACCGAACACCCGACAACAGTTCCCAG
CCGCCCAGCAGTCGTCCGGCGTACCTTGGGATTCCAGTTGAGCAAGACGAAACGCTTTCGGATGAGGATGAAGAGGACGTTTCGCCGGTGGAGAAGAAGG
GAACCGATGATGCGGATGGAGATGATTCACCAGGGCCATCCGGCAGTTCTACTCCCTCTGCTCCAGGAAATGGTAAGTCGGATTCCTCAGGCAAGAAGCC
GAAAGGCAGGGCTGGGAAGCCAGTTGGGGCCAAGGGATTCGGCAGAACGCAGATAATTCCGATTCGGAGTACCGTGGTTCATCGAGCGGAAACGTGTGCT
GCCTGCGATGCTGCCCTTCCCTTGGATGCTCGATTTACAGCTCGAATCGGCTATGTGACCATCGATCTGATAAGGGGTGCCCCGGATCAGCCTGGATTGA
GGCTAGAGGGGACCAAGCACCTTTTTGGGGAAGTTGCCTGTAGATGCGGCCATATTTCATGTACCGGTCCCGGCACAGGGGATAGACTTGAGATTGCAGG
ACGCAAAACCGCAACCAGTTTGAGTGAATGGCGTATTGTCGGCCCCATGTTGGCTGCTTTCATTGTTGCGCTCGCAAAACGGATGCGGTTGTCTCGCTCC
AAGGTTCAGGAGTTTTTGATCGATTGGTTCGGCCTGGAGTTGAGTGTCGGGACCATCGACAATTGCATACGTGAGGTCGGACTGGCTGCCGCCCCTGTTC
AGGATGAACTGATTGCCGAACTTCGTGCATCCGCTCTGGCTCATGTAGACGAAACGCCTTGGAAGCAAAAAGGTCAAGCTTTGTGGCTCTGGGTTTTCGC
GACGGCAAATACGGTCTTGTTTTGCGTGGGACGCCGGACTCGACAAATGGTCCTTGATATCCTGACCGAGGAATATGCAGGCTGGCTAATGAGCGATGGA
CTCATGAACTACCGGATTTTCTCCAGGCGGCTGCGCTGCTGGGCGCACTTGATCCGAAAAGCCAAGGGGTTGTCGACAAGCCTGGATAAAGAGAGCAAAC
GATTCGGCTCCAGGGTATTGGAGGTCCTGGAATACATGGTCGAAGAGGTCAAAGATGGATCGGATCCGCCAGCTGCCGAGTCGATTTTGGAAGAATTCCA
GGGATACTGCGAATTGTACAGAGATTATCCCCCGTCCGAGAAAGTTCGCAGCCTTGCCGTTGAGCTTCTCAATGACTGGGATGTTATCTGGCAACCTGTG
AGAGTTCCAGGGCTGCCGCTGACCAACAACGATGCGGAGCGGGCTCTGCGCCACTGGGTCATTGCGCGTCTGATCAGCCACGGAACTCGTACGGCAGAAG
GGAGTCGGGTATTGGGTGTGCTGGCTAGCGTCATCGAAACTTGCCGATTGCGGAACGTGTCTCCCTGGGACTATCTTGCTGAGGTGATTGCTGAACGGAG
AAAGGGAAACCTCGTACCGCCGTTACCGGCTCCAGTAGCCGCTTGATATCGGGGTCTCTGAACGGTTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
243 bp | 80 aa | 90 | 332 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MAKNILDTIFVENVKFQKESAIRSVFAYQSLEESSGGFSAVAPTPGYERIFALDPMGRRSAKISSWKPVLSCVRGFIHRR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1599 bp | 532 aa | 348 | 1946 | + | No |
Chemistry : DDE
ORF sequence :
MKLSDHDLLQIDEEYLSSLSSAELLAVSRKMLEDLKESRERLNRTPDNSSQPPSSRPAYLGIPVEQDETLSDEDEEDVSPVEKKGTDDADGDDSPGPSGS
STPSAPGNGKSDSSGKKPKGRAGKPVGAKGFGRTQIIPIRSTVVHRAETCAACDAALPLDARFTARIGYVTIDLIRGAPDQPGLRLEGTKHLFGEVACRC
GHISCTGPGTGDRLEIAGRKTATSLSEWRIVGPMLAAFIVALAKRMRLSRSKVQEFLIDWFGLELSVGTIDNCIREVGLAAAPVQDELIAELRASALAHV
DETPWKQKGQALWLWVFATANTVLFCVGRRTRQMVLDILTEEYAGWLMSDGLMNYRIFSRRLRCWAHLIRKAKGLSTSLDKESKRFGSRVLEVLEYMVEE
VKDGSDPPAAESILEEFQGYCELYRDYPPSEKVRSLAVELLNDWDVIWQPVRVPGLPLTNNDAERALRHWVIARLISHGTRTAEGSRVLGVLASVIETCR
LRNVSPWDYLAEVIAERRKGNLVPPLPAPVAA
STPSAPGNGKSDSSGKKPKGRAGKPVGAKGFGRTQIIPIRSTVVHRAETCAACDAALPLDARFTARIGYVTIDLIRGAPDQPGLRLEGTKHLFGEVACRC
GHISCTGPGTGDRLEIAGRKTATSLSEWRIVGPMLAAFIVALAKRMRLSRSKVQEFLIDWFGLELSVGTIDNCIREVGLAAAPVQDELIAELRASALAHV
DETPWKQKGQALWLWVFATANTVLFCVGRRTRQMVLDILTEEYAGWLMSDGLMNYRIFSRRLRCWAHLIRKAKGLSTSLDKESKRFGSRVLEVLEYMVEE
VKDGSDPPAAESILEEFQGYCELYRDYPPSEKVRSLAVELLNDWDVIWQPVRVPGLPLTNNDAERALRHWVIARLISHGTRTAEGSRVLGVLASVIETCR
LRNVSPWDYLAEVIAERRKGNLVPPLPAPVAA
Blast result :
Comments
ISMasp4 is 43% aa similar to ISStau2.
The ORFA is a passenger gene annotated as unknown protein.
The ORFA is a passenger gene annotated as unknown protein.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Goodwin,L.A., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N. and Richardson,P. (2006) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).