ISMxa3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008095 | ND | Myxococcus xanthus | Myxococcus xanthus DK 1622 |
DNA section
IS Length : 1926 bp
Ends
IR Length : 18/20
IRL : GTAAGCGTTCAGGGGTGATGGGCGGCTGAAGAAGGAGCAGGCCAGCAGTC
IRR : GTAACCGTTCAGGGGTGGTGTTGAGGCCTCCGTCGCGGTGTGCAACCCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAGAGGTTT | CG | CATCCCATGA | 2 |
DNA sequence
GTAAGCGTTCAGGGGTGATGGGCGGCTGAAGAAGGAGCAGGCCAGCAGTCGGCGGGAGGCCTGTCGCTCGCTGACGCGGCGTGGGACATGGGACACACCC
CGTCGTGGCCGAGGTCGACCCCAAGGATGCGCGCATCGCGGAACTTGAGCGTCAGGTCGAGGAGCTGACTCGACTGGTGCAGGAGCTGCGGGAGCAGTTG
CGGCGAGATTCGGGCAACTCGAACCGGCCGCCGTCGAGCGATACGCCGGGGCAGAAGGCCGTGCGACGCAGGCAGAGCGGCAGTGAGAAGAAGCGCGGTG
GCCAGCCGGGGCACGTGGGACTGACACGCGCGCTTGTTGCCGAGGAGAAGGTGAGCGAGTTCAAGCACCTCTTCCCGTCCGCGTGTGGGAATTGCTGGGC
TCCTCTCTCGCCCGAAGGTGGCACGCGGGTGCGGCGCTACCAGTCCGTGGAATTGCCGCCGCTCAAGGCCCACGTCACGCAGTGGATGCGCCATGGCGTG
GAGTGCCCCAGGTGCAAGCATGAGACGTGGGCAAGCACCGCGGCGATTCCGACGTCGGCCTTCGGCCCGCGGCTGTCCGCCGTCGTTGGCCTTTTGACGG
GCGTCTACCACCTGAGTCGGCGCTCGGCGGTGAGGCTTCTGGGGGATGTGCTGGGCATCGACATTTCGCTGGGGGCAGTGAGCGCCGTCGAGGCGCGCGT
CAGCGAGGCGGTGAAGCCCGCGGTGGACGAGGCCTGGTCCCGGGTGTTGTTGGCGCCGGTGAAGCACACGGACGGCACGCAGTGGCTTGAGGCCGGCCTG
GCGCGCACGCTATGGACCATCGCCTCGTCAATGGCCACCGTCTTCAAGATTCTGGCGGACAGCAAGTCACGGACACTTGCGCCGCTCTTCGGCCAGAAAC
TCGGCGTCCTCGTGAGCGACCGCGCCACCGCGCTGAATTTCTGGGCCATGGAAGCGCGGCAGGTGTGCTGGGCCCACCTCTTGAGGAAGGCCGTTTCATT
CTCGGAGCGTGACGGGCCAGCCGGAGCGATTGGGCGCGAGCTACTCGACTACATCGGCATCCTCTTCGACTATTGGGGACGACTGCGCAGCGGCGAGTTG
CAGCGGGACACGCTGCGTGAGCGCATGGCCTCGGTGCGCACGCAGGTGGAAGCCTTGCTTGAGCGCGCCGTGGCCGCGAGGCTGCCGCACGTCTCTGGCT
CCTGTGAGGACATCCTCCAGCACCGGGCGGCGCTGTGGACTTTCGTTGACAGGGAGGGCGTCGAGCCCACCAACAACCATGCCGAGCGCGAGCTGCGGGC
CTTCGTCCTGTGGCGCAAGCGAAGCTTCGGCACCCAGAGCCCTCGGGGGAACCTCTTCGCCGAGAGGGTGATGACGGTGGCGCATACCGCCCGCAAGCAG
GAAAAGAATGTGCTCGAGTTCCTGACGGCCTGCTGCACCGCCGCCCGGACGGGGATGCCCGCGCCCTCGCTCTTCGCCGCGCCCTGAGCGCTACGCGGCC
TTCTTTCACATCGGGAAGTACCTCGTCGCGTTTCGCTCACCCGCCCTGCGCACACGGCCCTCTTGCTTCAGGCGCATCATCGGCCGATGAAGCGCCCGTG
GCTTTTCTCCGACGCGCGCGGCCAGGGCAGCCATCGTCTCGCCCGGACACTCCTGCACCGCCTCGAGCAGCCGCTCCGCGAGGTCAGCGAGGGCACCTGA
AGAGCGTCGGACTCTCGTCCCGCGCCGCTGCATTGCCACGGAGGGCGCGGGAGCCAACACCGAGAACGCGCGCTCCACCGCAGCCTTTACCAAGCGTTGC
TGCTCCACCAGGTGCTCGTGGACCAATCGTTCAATCTTCGATTCCAGCGTCCCAAGGGCTTTCATGCTCATCCGCCACGGGTTGCACACCGCGACGGAGG
CCTCAACACCACCCCTGAACGGTTAC
CGTCGTGGCCGAGGTCGACCCCAAGGATGCGCGCATCGCGGAACTTGAGCGTCAGGTCGAGGAGCTGACTCGACTGGTGCAGGAGCTGCGGGAGCAGTTG
CGGCGAGATTCGGGCAACTCGAACCGGCCGCCGTCGAGCGATACGCCGGGGCAGAAGGCCGTGCGACGCAGGCAGAGCGGCAGTGAGAAGAAGCGCGGTG
GCCAGCCGGGGCACGTGGGACTGACACGCGCGCTTGTTGCCGAGGAGAAGGTGAGCGAGTTCAAGCACCTCTTCCCGTCCGCGTGTGGGAATTGCTGGGC
TCCTCTCTCGCCCGAAGGTGGCACGCGGGTGCGGCGCTACCAGTCCGTGGAATTGCCGCCGCTCAAGGCCCACGTCACGCAGTGGATGCGCCATGGCGTG
GAGTGCCCCAGGTGCAAGCATGAGACGTGGGCAAGCACCGCGGCGATTCCGACGTCGGCCTTCGGCCCGCGGCTGTCCGCCGTCGTTGGCCTTTTGACGG
GCGTCTACCACCTGAGTCGGCGCTCGGCGGTGAGGCTTCTGGGGGATGTGCTGGGCATCGACATTTCGCTGGGGGCAGTGAGCGCCGTCGAGGCGCGCGT
CAGCGAGGCGGTGAAGCCCGCGGTGGACGAGGCCTGGTCCCGGGTGTTGTTGGCGCCGGTGAAGCACACGGACGGCACGCAGTGGCTTGAGGCCGGCCTG
GCGCGCACGCTATGGACCATCGCCTCGTCAATGGCCACCGTCTTCAAGATTCTGGCGGACAGCAAGTCACGGACACTTGCGCCGCTCTTCGGCCAGAAAC
TCGGCGTCCTCGTGAGCGACCGCGCCACCGCGCTGAATTTCTGGGCCATGGAAGCGCGGCAGGTGTGCTGGGCCCACCTCTTGAGGAAGGCCGTTTCATT
CTCGGAGCGTGACGGGCCAGCCGGAGCGATTGGGCGCGAGCTACTCGACTACATCGGCATCCTCTTCGACTATTGGGGACGACTGCGCAGCGGCGAGTTG
CAGCGGGACACGCTGCGTGAGCGCATGGCCTCGGTGCGCACGCAGGTGGAAGCCTTGCTTGAGCGCGCCGTGGCCGCGAGGCTGCCGCACGTCTCTGGCT
CCTGTGAGGACATCCTCCAGCACCGGGCGGCGCTGTGGACTTTCGTTGACAGGGAGGGCGTCGAGCCCACCAACAACCATGCCGAGCGCGAGCTGCGGGC
CTTCGTCCTGTGGCGCAAGCGAAGCTTCGGCACCCAGAGCCCTCGGGGGAACCTCTTCGCCGAGAGGGTGATGACGGTGGCGCATACCGCCCGCAAGCAG
GAAAAGAATGTGCTCGAGTTCCTGACGGCCTGCTGCACCGCCGCCCGGACGGGGATGCCCGCGCCCTCGCTCTTCGCCGCGCCCTGAGCGCTACGCGGCC
TTCTTTCACATCGGGAAGTACCTCGTCGCGTTTCGCTCACCCGCCCTGCGCACACGGCCCTCTTGCTTCAGGCGCATCATCGGCCGATGAAGCGCCCGTG
GCTTTTCTCCGACGCGCGCGGCCAGGGCAGCCATCGTCTCGCCCGGACACTCCTGCACCGCCTCGAGCAGCCGCTCCGCGAGGTCAGCGAGGGCACCTGA
AGAGCGTCGGACTCTCGTCCCGCGCCGCTGCATTGCCACGGAGGGCGCGGGAGCCAACACCGAGAACGCGCGCTCCACCGCAGCCTTTACCAAGCGTTGC
TGCTCCACCAGGTGCTCGTGGACCAATCGTTCAATCTTCGATTCCAGCGTCCCAAGGGCTTTCATGCTCATCCGCCACGGGTTGCACACCGCGACGGAGG
CCTCAACACCACCCCTGAACGGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 81 | 1487 | + | No |
Chemistry : DDE
ORF sequence :
VGHGTHPVVAEVDPKDARIAELERQVEELTRLVQELREQLRRDSGNSNRPPSSDTPGQKAVRRRQSGSEKKRGGQPGHVGLTRALVAEEKVSEFKHLFPS
ACGNCWAPLSPEGGTRVRRYQSVELPPLKAHVTQWMRHGVECPRCKHETWASTAAIPTSAFGPRLSAVVGLLTGVYHLSRRSAVRLLGDVLGIDISLGAV
SAVEARVSEAVKPAVDEAWSRVLLAPVKHTDGTQWLEAGLARTLWTIASSMATVFKILADSKSRTLAPLFGQKLGVLVSDRATALNFWAMEARQVCWAHL
LRKAVSFSERDGPAGAIGRELLDYIGILFDYWGRLRSGELQRDTLRERMASVRTQVEALLERAVAARLPHVSGSCEDILQHRAALWTFVDREGVEPTNNH
AERELRAFVLWRKRSFGTQSPRGNLFAERVMTVAHTARKQEKNVLEFLTACCTAARTGMPAPSLFAAP
ACGNCWAPLSPEGGTRVRRYQSVELPPLKAHVTQWMRHGVECPRCKHETWASTAAIPTSAFGPRLSAVVGLLTGVYHLSRRSAVRLLGDVLGIDISLGAV
SAVEARVSEAVKPAVDEAWSRVLLAPVKHTDGTQWLEAGLARTLWTIASSMATVFKILADSKSRTLAPLFGQKLGVLVSDRATALNFWAMEARQVCWAHL
LRKAVSFSERDGPAGAIGRELLDYIGILFDYWGRLRSGELQRDTLRERMASVRTQVEALLERAVAARLPHVSGSCEDILQHRAALWTFVDREGVEPTNNH
AERELRAFVLWRKRSFGTQSPRGNLFAERVMTVAHTARKQEKNVLEFLTACCTAARTGMPAPSLFAAP
Blast result :
Comments
ISMxa3 is 55% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Goldman,B.S., Nierman,W.C., Kaiser,D., Slater,S.C., Durkin,A.S., Eisen,J., Ronning,C.M., Barbazuk,W.B., Blanchard,M., Field,C., Halling,C., Hinkle,G., Iartchuk,O., Kim,H.S., Mackenzie,C., Madupu,R., Miller,N., Shvartsbeyn,A., Sullivan,S.A., Vaudin,M., Wiegand,R. and Kaplan,H.B. (2006)(er) Proc. Natl. Acad. Sci. U.S.A. 103 (41), 15200-15205
3]Nierman,W.C.(2005) Direct Submission GenBank.
2] Goldman,B.S., Nierman,W.C., Kaiser,D., Slater,S.C., Durkin,A.S., Eisen,J., Ronning,C.M., Barbazuk,W.B., Blanchard,M., Field,C., Halling,C., Hinkle,G., Iartchuk,O., Kim,H.S., Mackenzie,C., Madupu,R., Miller,N., Shvartsbeyn,A., Sullivan,S.A., Vaudin,M., Wiegand,R. and Kaplan,H.B. (2006)(er) Proc. Natl. Acad. Sci. U.S.A. 103 (41), 15200-15205
3]Nierman,W.C.(2005) Direct Submission GenBank.