ISMhu11
- Family IS1
- Group ISMhu11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007796 | ND | Methanospirillum hungatei | Methanospirillum hungatei JF-1 |
DNA section
IS Length : 1097 bp
Ends
IR Length : 15/23
IRL : GGTAGTGCCCTGTTAGCAAGCTGGTAATACTAAGTGCAAATAAAGTATTA
IRR : GGTACTGGCCTCCTTTAGAACTGAACATGGTAGTTTAAAAACTCACTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCATCAACCTTATACAGGTGA | GAAAATTT | CCTGATAAACAATATCAGTCAG | 8 |
TGATATTAGAACATAATAGAGT | GGATTTTT | TTCATAGAATCCATACATTAAT | 8 |
GAATTTTCCTCTTTGATCACTG | TCCCTTCT | CCACTGCTCACACAGACGGAGC | 8 |
CTATTTTCGGGTCACTTGCAAC | TAAAAATC | CCATAAAAACGAAAAAGAAGGT | 8 |
TTTTCTTAATTAAATCATTGCT | AATTACTC | AATAGTTTAATAGTACTATTAT | 8 |
CTTACTCTATCGGTTACCCAAT | AAGCAATA | GGACTTCCCGGAATCTTCTTAA | 8 |
CGAGAATTTCTAAGGTATCCAG | CTTTCTTG | CAACTGTATGACGATTAATCCC | 8 |
CTCACCGGAGATATGACATGGA | AAAACTTC | CGTGTGAGACAATAGTGTGGGA | 8 |
CTTCTGGTCCACATTTTCATTG | AAAATTTT | GCGGTGATATTAAAACCGATAG | 8 |
DNA sequence
GGTAGTGCCCTGTTAGCAAGCTGGTAATACTAAGTGCAAATAAAGTATTAAATTTTATGTACTAAAAATTAATATAAGTTTAGATATAATTATTTTCATG
GTTGGAAAACGTGGTCCTATATTGATTACGTGTCAAAATCCGGATTGTACTTATTTTCAAATTGAAGATGGAAAGAATATTACTAAAAATGGGCATAATT
CTGCAGGCAATCAACAGTACTATTGCCATCACTGTCGACGTTTTTTTATTGAAACTAAAAATACTCCTCTGTATGATTCTCGTTTACCACGAACTGCTGT
TCTCATAATTGCGAAACACTCGACTGAAAAAACTTCAATTCGAGGAGTATCTCGAGTTACCGGACACCATCGCGACACTATATCTCGATATTATCACTTA
ATCGGTGAACATGCTGAAAAACTCAACGATTATTTTATTCATGACATTTCCGCGGGGGATTGTGAGATGGATGAAATTTGGGAGTTTGTTCAAAAAAAAA
CAAGAATCTCCTAACAACTGACTCTGAAGAATTAGGTGATTGTTGGTCCTATACTTGTTTTAAAAGGGATTCTGGATTATTTTTAGCATTTGAATCTGGA
AAAAGAAATATTGATACTTGTGCAGATATGTTAGTTCGATTTTTTAACCGAATGGAACTTCCAACGCCAGAAAACAAAATATCGATTTTTACTGATGGAA
ACGTCCAATATAGCATTTGTTTACCTGAATTATATTGTGAGCCATGCTTGGATTATGGTCAGGTGATCAAAGTAAAAGAGAAGAATAAACTTGTTTATGT
CATTCGAGAGAAAATTATGGGAAATCCAGATAGTAAAGCAATCTCTACCTCAGTCATTGAGGGCTACAATAATAAAATCAGACAACGATTGAGCCGTTTT
GGAAGGAAAACTGCCTCTTTTTCAAAAAAACTCAATAGATTCATTTCAGCGCTAAATATCTTTCAATTTGTGCATAATTTTATCGAAGTAAAAAGTAGTC
ACAAGTCTCCAGCAATGTTAGAAAGTATTACTGATCATCTTTGGAATTGGAGTGAGTTTTTAAACTACCATGTTCAGTTCTAAAGGAGGCCAGTACC
GTTGGAAAACGTGGTCCTATATTGATTACGTGTCAAAATCCGGATTGTACTTATTTTCAAATTGAAGATGGAAAGAATATTACTAAAAATGGGCATAATT
CTGCAGGCAATCAACAGTACTATTGCCATCACTGTCGACGTTTTTTTATTGAAACTAAAAATACTCCTCTGTATGATTCTCGTTTACCACGAACTGCTGT
TCTCATAATTGCGAAACACTCGACTGAAAAAACTTCAATTCGAGGAGTATCTCGAGTTACCGGACACCATCGCGACACTATATCTCGATATTATCACTTA
ATCGGTGAACATGCTGAAAAACTCAACGATTATTTTATTCATGACATTTCCGCGGGGGATTGTGAGATGGATGAAATTTGGGAGTTTGTTCAAAAAAAAA
CAAGAATCTCCTAACAACTGACTCTGAAGAATTAGGTGATTGTTGGTCCTATACTTGTTTTAAAAGGGATTCTGGATTATTTTTAGCATTTGAATCTGGA
AAAAGAAATATTGATACTTGTGCAGATATGTTAGTTCGATTTTTTAACCGAATGGAACTTCCAACGCCAGAAAACAAAATATCGATTTTTACTGATGGAA
ACGTCCAATATAGCATTTGTTTACCTGAATTATATTGTGAGCCATGCTTGGATTATGGTCAGGTGATCAAAGTAAAAGAGAAGAATAAACTTGTTTATGT
CATTCGAGAGAAAATTATGGGAAATCCAGATAGTAAAGCAATCTCTACCTCAGTCATTGAGGGCTACAATAATAAAATCAGACAACGATTGAGCCGTTTT
GGAAGGAAAACTGCCTCTTTTTCAAAAAAACTCAATAGATTCATTTCAGCGCTAAATATCTTTCAATTTGTGCATAATTTTATCGAAGTAAAAAGTAGTC
ACAAGTCTCCAGCAATGTTAGAAAGTATTACTGATCATCTTTGGAATTGGAGTGAGTTTTTAAACTACCATGTTCAGTTCTAAAGGAGGCCAGTACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
417 bp | 138 aa | 98 | 514 | + | No |
Description : First part of the transposase
ORF sequence :
MVGKRGPILITCQNPDCTYFQIEDGKNITKNGHNSAGNQQYYCHHCRRFFIETKNTPLYDSRLPRTAVLIIAKHSTEKTSIRGVSRVTGHHRDTISRYYH
LIGEHAEKLNDYFIHDISAGDCEMDEIWEFVQKKTRIS
LIGEHAEKLNDYFIHDISAGDCEMDEIWEFVQKKTRIS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
609 bp | 202 aa | 475 | 1083 | + | No |
Description : Second part of the transposase
ORF sequence :
NLGVCSKKNKNLLTTDSEELGDCWSYTCFKRDSGLFLAFESGKRNIDTCADMLVRFFNRMELPTPENKISIFTDGNVQYSICLPELYCEPCLDYGQVIKV
KEKNKLVYVIREKIMGNPDSKAISTSVIEGYNNKIRQRLSRFGRKTASFSKKLNRFISALNIFQFVHNFIEVKSSHKSPAMLESITDHLWNWSEFLNYHV
QF
KEKNKLVYVIREKIMGNPDSKAISTSVIEGYNNKIRQRLSRFGRKTASFSKKLNRFISALNIFQFVHNFIEVKSSHKSPAMLESITDHLWNWSEFLNYHV
QF
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
986 bp | 328 aa | 98 | 1083 | + | Yes |
Chemistry : DDE
ORF sequence :
MVGKRGPILITCQNPDCTYFQIEDGKNITKNGHNSAGNQQYYCHHCRRFFIETKNTPLYDSRLPRTAVLIIAKHSTEKTSIRGVSRVTGHHRDTISRYYH
LIGEHAEKLNDYFIHDISAGDCEMDEIWEFVQKKNKNLLTTDSEELGDCWSYTCFKRDSGLFLAFESGKRNIDTCADMLVRFFNRMELPTPENKISIFTD
GNVQYSICLPELYCEPCLDYGQVIKVKEKNKLVYVIREKIMGNPDSKAISTSVIEGYNNKIRQRLSRFGRKTASFSKKLNRFISALNIFQFVHNFIEVKS
SHKSPAMLESITDHLWNWSEFLNYHVQF
LIGEHAEKLNDYFIHDISAGDCEMDEIWEFVQKKNKNLLTTDSEELGDCWSYTCFKRDSGLFLAFESGKRNIDTCADMLVRFFNRMELPTPENKISIFTD
GNVQYSICLPELYCEPCLDYGQVIKVKEKNKLVYVIREKIMGNPDSKAISTSVIEGYNNKIRQRLSRFGRKTASFSKKLNRFISALNIFQFVHNFIEVKS
SHKSPAMLESITDHLWNWSEFLNYHVQF
Blast result :
Comments
ISMhu11 is 39% aa similar to ISLysp1.
The third ORf is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
The third ORf is the putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Kiss,H., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N., McInerney,M.J., Brockman,F., Culley,D., Ferry,J.G., Gunsalus,R.P., Morrison,M., Plugge,C., Scholten,J., Stams,A.J.M., Boone,D.R. and Richardson,P. (2006) Direct submission GenBank.