ISOpb1
- Family IS1
- Group ISMhu11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ABEA01000009 | ND | Opitutaceae bacterium | Opitutaceae bacterium TAV2 |
DNA section
IS Length : 4054 bp
Ends
IR Length : 65/67
IRL : GGTATTCCCTCAATTTCGATCTACCAAACAATCAACAACTTACAAAGCTC
IRR : GGTATTCCCTCAATTTCGATCTACCAAACAATCAACAACTTACAAAGCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTAAAGAAGTATT | CACTGGCT | GGATACTTTTTTCTC | 8 |
DNA sequence
GGTATTCCCTCAATTTCGATCTACCAAACAATCAACAACTTACAAAGCTCTCCAGTCGTAAGGATTTCGCCCATTGTTTAGTGACAATCTTGTCCATTAT
TTCTACACCAATTTCACATTGAGAGTTTTTAATTGTAAGAAATTTCATGGATAAAAATAAAAATTTCTTCTCAAAAACTCATGGACTCAACCTCAGTCGC
ATACTTTTCATAGAAAAACGTCATGAATATCCTGATTTTTACTGGGTTTATTTCGATACCGGGTTAGTGGTCTCTATTACCAATACAGAATATGAAGATA
TAACACAATATATCACCGCATTATAAATGGGCGAAAGCCAACTGACTTATAGGATTCGACCTCAATTAGTTTATATTCAACAATAGAACCATCTTCTAGT
GTAAAACGCAAGAAGCTGTCTATTTCTTCTGCTTTCCCGGAATGTTGTTTTATTTCGCCCGAAGTAAGCTTTACTTCGTAATTTATTACTATTTGCTGCG
TCATTTTGTCTATTGGTTTATTTTTCGGTTAGCGAATCTTAAACTAAAATTCTCGCACAATAGCACCTTGTAGTCAAGCAATTAAATTTCGTAACTTATT
ATTGGAGCTACGAAGGCGGGCTTCTTGGCTTCTGTAATGGATTCATAAATATTTTTATATTGGCGGGCTTTAGCGGTGTCTCAGAAACGCCAATCTTCGC
AGAATATGATTCTATTGTCAATGGTCTTTATTCCATAACTTATTGATTTTAAATTAAAAAGACAGAAAAATAAAAATAAAGTTCAGTGATTTTATTTATT
TTTCAAAACAAGTTGATTGAAAATAAAGACCAGCATTATTTTTAATTTCCCTCACCTATTAAAATATATTGATCCGATCTTCCCCGAAATAATTCATTCC
CCTTTTCTATCAGATTTTGCTTGACCGATCAAGGATAAAATGACAGTTTCATTCATTATGCCAAAGAAAGATTTCAGTCAAAATGCCCTCTCCATTGTGG
AGTTGGTCACTGGTGAGAAAATTGCCAAAAATTCAGCCGCCGTTTCCCTCGGACGATTGGGCGGACTAAAAGGCGGGAAGGCCCGCGCACTCAAATTAAC
AGGCGAAGAACGCAGTGCCATTGCGAAAAAGGCAGCATTAAGTCGATGGAAGAAAAAGCAAAATGAGGGATTAGATTTTAGTAAAAAACAGAAAAGGAAT
ATTTCAGAATCATAAATAATTTTTAAATAATAGGTTAAGTCATATTTTATTCCCCACTTTTTTCTTGCTATCCGTGACCGCTCAAGCATAATCGGGACCA
TGAACCGATTGGCACATTCAAAGCGAGTTCAGATGCTTTCCTGCCTTGTGGATGGATGCAGCATGGAAGCAACGGCCAGAATCGTGCATGTTGCGCCCAA
CACAGTTGCAAAATTTTTAGTGGATTTGGGAAAAGCCTGCACGCGGTATCAAGCCCGTGTCTTTGAAAATATTTTCTGTAAGCGAATTCAATGCGATGAA
ATTTGGTCTTTTGTCGGATGCAAAGAAAAGAACGTAACAAACAACGGAAAACGGCAGGGCGATACTTGGACATGGATTGCTTGCGACCCTGACACAAAAT
TAGTTCCTTGTTGGTTTATCGGGCGTCGGGATTCTGAATCTGCTAAAAAATTCATGAGGCGACTTGCCCGCCACTTATCACTAGGCAGCACTCAAATTAC
CACCGATGGATTAAAAGCCTATATCAATGCCATTAAAGAAATATTATGGATTGAAACCAGTTATGGCATGGTTGAGAAAAAATACGATGTCAGTGGAGAC
GATCACAGAACCAGATATATCGGGAGCGAAAAGACGGCAATTTTTGGAAACCCCGACCCCGACACAATGAATACCTCCATCGTGGAACGGCAAAATTTGA
CCATGAGAATGTCAATGCGCCGCTTCACTCGAAAAACAAATGGCTACTCCAAAAAAATCGCAAACCACCGTTATGCTATCGCCTTGCATTTTATGTATTA
CAACTTCGCCAGAATTCATTCCACATTGAACACAACCCCAGCAGTAGCCGCAGGAATTGCAAATCATGTTTGGAGTTTGGATAAGATTCTGAAACTTATT
GAAAGATAGGTAATTAACAATTCTCAATTGACTTAATCTTCTAATTTTACTTCATAGATTTCCTACAGTCTAATTTTCGCAGAAACTCGTTGATAAGTCT
CCCGTCTGAAAACCGCTAAATTTCTCTTGGGAGAGGACTTATTGATCCGAGCGCGTCACAACTGGCGCGGTTTGGTCATTCCTCTCCTAAGCTCTTAGCG
GTGCTTCAGACGGCGGGATGTTCTGGGCCGCGCCTCTTTATTTTTGGGTTTTTACGGAAGTTGTTCTGATCCAAACAAAAAAATAGAATCCGTCATGAAA
ACCGCTAAAAATAAAAATATAATTAAATTAATCCTTTTCCTTATTGGAATGGGATTCCTGACTGTTGGATGCGAAAAACAGCATTCTTCTTTTCAAGTGG
AAGATAACTCCCAAGACCCTACCGCTTTATTAAGAGCACGACTAACTAAATTAAAATCTTTCGCCATTGATTCAGATGCGAAGAACCCCGGAGCAAAGAG
TAGCATTTTTCCGAAAATATCTTACGATGTTAAGCAAACAAATTCAATGGTTTCTCCTTATATAGGAACAGTTGAAATCCACGAAATATCTTATGAGGTC
GATTCTAATGGGATCAACCGTGAAAAGGGATGGCGTGGTTTAAAAATTACATTAGCATTCCAGCAAAATGAATGGGTTGTGAAACAAGTTCGAGTGAAAA
CTTATACATCTTCTGATTTTCAACAATATATAGAGGACTACAGAGACGCTTATAATTCTGAGATTGCTCAGGCCAAAATAATACTTTGGATGTTTGGCGA
CTAACTTAATGTCAGATATAATACTCATAGAAATGCAAAAAAACATTTAAATTATTATGAAGCCCGAATACCAACAAATTTTAAAAATCATCTTTCTAGC
GGTTGTTGTCCCCGTTATGGGCCAAGCTGATGTAAAATATGCTCCTTTGCAGTCTAGCATAGTGAAGGTCAGTAATATTCGTAGAACGGCAGCAATCGAA
GGAGATTGGAAAGAAGGAATAGATGAAGCATGGAAAGATGCAAAGAAGAAAGCCTTTGAAAAAGCTCTTAATGCTTACAAAATCACCTCTCAGAGAATTG
GAGTAAAAGGAAAAATGAGGAGAGTTAAAATTACCATAGAATGGACAGAATAATCGCTACATCAAAAAAACAGTTTGTAAATAAAGATACTTGATATTTG
AGCCACATAAGATATTGAAATTCAATTTTCTGGCATCCCGCCAGAATCAGTAAAAACCATTAACCAAAAAATAAAGAAATAAAATGAAATTTGATCTAAA
ATTATCTGATACAGAAAAGCCAATTCATGAATCAGATGGGAAAAGATGTTTCTTCGTTGAAAAGATGGATATTAACAACATATCTTCCCATTTAATTAAG
CATAACATAATATTTACAAATGAAGGAATTTGTGCCACAAGTGAAATAGGGGAATTATATTACTTTGTATCAGATTCAAAGGAGGAAGATATAATGTTCG
CACTTGAAGATTGCATCAAATTACTCCGTCCATACCCAAAAGGTTAAGCCAGAGGGGTCGATTTTTTTAGTTTCGATTTCTTTTTGAATTACACTCAACG
CCATAGGAACAAAAGGACTAAGATTCTTGAATTTTCTTATCATTTTTGCATGGACATTTATCCATGAAACTATTTTACCGTCCTGATCCTTCGCGGCAAA
ACAGAGAAGATCATAAGACAAATTGAAGGGATTCAAAGAATCTAATATTATGCTAAAACCGTTATATTGAATTGGCACGCTCTTGGTGATATTATTAAAA
TTTGCATTCTTCATAAAAAAATTGTTTTAAATATTTTTTTGGCTTTCTTTTTTAAAAAGGAGAGGGGGATTTTTTTCTAAAATTACAAAATCATTACGAT
TGGAGAGCTTTGTAAGTTGTTGATTGTTTGGTAGATCGAAATTGAGGGAATACC
TTCTACACCAATTTCACATTGAGAGTTTTTAATTGTAAGAAATTTCATGGATAAAAATAAAAATTTCTTCTCAAAAACTCATGGACTCAACCTCAGTCGC
ATACTTTTCATAGAAAAACGTCATGAATATCCTGATTTTTACTGGGTTTATTTCGATACCGGGTTAGTGGTCTCTATTACCAATACAGAATATGAAGATA
TAACACAATATATCACCGCATTATAAATGGGCGAAAGCCAACTGACTTATAGGATTCGACCTCAATTAGTTTATATTCAACAATAGAACCATCTTCTAGT
GTAAAACGCAAGAAGCTGTCTATTTCTTCTGCTTTCCCGGAATGTTGTTTTATTTCGCCCGAAGTAAGCTTTACTTCGTAATTTATTACTATTTGCTGCG
TCATTTTGTCTATTGGTTTATTTTTCGGTTAGCGAATCTTAAACTAAAATTCTCGCACAATAGCACCTTGTAGTCAAGCAATTAAATTTCGTAACTTATT
ATTGGAGCTACGAAGGCGGGCTTCTTGGCTTCTGTAATGGATTCATAAATATTTTTATATTGGCGGGCTTTAGCGGTGTCTCAGAAACGCCAATCTTCGC
AGAATATGATTCTATTGTCAATGGTCTTTATTCCATAACTTATTGATTTTAAATTAAAAAGACAGAAAAATAAAAATAAAGTTCAGTGATTTTATTTATT
TTTCAAAACAAGTTGATTGAAAATAAAGACCAGCATTATTTTTAATTTCCCTCACCTATTAAAATATATTGATCCGATCTTCCCCGAAATAATTCATTCC
CCTTTTCTATCAGATTTTGCTTGACCGATCAAGGATAAAATGACAGTTTCATTCATTATGCCAAAGAAAGATTTCAGTCAAAATGCCCTCTCCATTGTGG
AGTTGGTCACTGGTGAGAAAATTGCCAAAAATTCAGCCGCCGTTTCCCTCGGACGATTGGGCGGACTAAAAGGCGGGAAGGCCCGCGCACTCAAATTAAC
AGGCGAAGAACGCAGTGCCATTGCGAAAAAGGCAGCATTAAGTCGATGGAAGAAAAAGCAAAATGAGGGATTAGATTTTAGTAAAAAACAGAAAAGGAAT
ATTTCAGAATCATAAATAATTTTTAAATAATAGGTTAAGTCATATTTTATTCCCCACTTTTTTCTTGCTATCCGTGACCGCTCAAGCATAATCGGGACCA
TGAACCGATTGGCACATTCAAAGCGAGTTCAGATGCTTTCCTGCCTTGTGGATGGATGCAGCATGGAAGCAACGGCCAGAATCGTGCATGTTGCGCCCAA
CACAGTTGCAAAATTTTTAGTGGATTTGGGAAAAGCCTGCACGCGGTATCAAGCCCGTGTCTTTGAAAATATTTTCTGTAAGCGAATTCAATGCGATGAA
ATTTGGTCTTTTGTCGGATGCAAAGAAAAGAACGTAACAAACAACGGAAAACGGCAGGGCGATACTTGGACATGGATTGCTTGCGACCCTGACACAAAAT
TAGTTCCTTGTTGGTTTATCGGGCGTCGGGATTCTGAATCTGCTAAAAAATTCATGAGGCGACTTGCCCGCCACTTATCACTAGGCAGCACTCAAATTAC
CACCGATGGATTAAAAGCCTATATCAATGCCATTAAAGAAATATTATGGATTGAAACCAGTTATGGCATGGTTGAGAAAAAATACGATGTCAGTGGAGAC
GATCACAGAACCAGATATATCGGGAGCGAAAAGACGGCAATTTTTGGAAACCCCGACCCCGACACAATGAATACCTCCATCGTGGAACGGCAAAATTTGA
CCATGAGAATGTCAATGCGCCGCTTCACTCGAAAAACAAATGGCTACTCCAAAAAAATCGCAAACCACCGTTATGCTATCGCCTTGCATTTTATGTATTA
CAACTTCGCCAGAATTCATTCCACATTGAACACAACCCCAGCAGTAGCCGCAGGAATTGCAAATCATGTTTGGAGTTTGGATAAGATTCTGAAACTTATT
GAAAGATAGGTAATTAACAATTCTCAATTGACTTAATCTTCTAATTTTACTTCATAGATTTCCTACAGTCTAATTTTCGCAGAAACTCGTTGATAAGTCT
CCCGTCTGAAAACCGCTAAATTTCTCTTGGGAGAGGACTTATTGATCCGAGCGCGTCACAACTGGCGCGGTTTGGTCATTCCTCTCCTAAGCTCTTAGCG
GTGCTTCAGACGGCGGGATGTTCTGGGCCGCGCCTCTTTATTTTTGGGTTTTTACGGAAGTTGTTCTGATCCAAACAAAAAAATAGAATCCGTCATGAAA
ACCGCTAAAAATAAAAATATAATTAAATTAATCCTTTTCCTTATTGGAATGGGATTCCTGACTGTTGGATGCGAAAAACAGCATTCTTCTTTTCAAGTGG
AAGATAACTCCCAAGACCCTACCGCTTTATTAAGAGCACGACTAACTAAATTAAAATCTTTCGCCATTGATTCAGATGCGAAGAACCCCGGAGCAAAGAG
TAGCATTTTTCCGAAAATATCTTACGATGTTAAGCAAACAAATTCAATGGTTTCTCCTTATATAGGAACAGTTGAAATCCACGAAATATCTTATGAGGTC
GATTCTAATGGGATCAACCGTGAAAAGGGATGGCGTGGTTTAAAAATTACATTAGCATTCCAGCAAAATGAATGGGTTGTGAAACAAGTTCGAGTGAAAA
CTTATACATCTTCTGATTTTCAACAATATATAGAGGACTACAGAGACGCTTATAATTCTGAGATTGCTCAGGCCAAAATAATACTTTGGATGTTTGGCGA
CTAACTTAATGTCAGATATAATACTCATAGAAATGCAAAAAAACATTTAAATTATTATGAAGCCCGAATACCAACAAATTTTAAAAATCATCTTTCTAGC
GGTTGTTGTCCCCGTTATGGGCCAAGCTGATGTAAAATATGCTCCTTTGCAGTCTAGCATAGTGAAGGTCAGTAATATTCGTAGAACGGCAGCAATCGAA
GGAGATTGGAAAGAAGGAATAGATGAAGCATGGAAAGATGCAAAGAAGAAAGCCTTTGAAAAAGCTCTTAATGCTTACAAAATCACCTCTCAGAGAATTG
GAGTAAAAGGAAAAATGAGGAGAGTTAAAATTACCATAGAATGGACAGAATAATCGCTACATCAAAAAAACAGTTTGTAAATAAAGATACTTGATATTTG
AGCCACATAAGATATTGAAATTCAATTTTCTGGCATCCCGCCAGAATCAGTAAAAACCATTAACCAAAAAATAAAGAAATAAAATGAAATTTGATCTAAA
ATTATCTGATACAGAAAAGCCAATTCATGAATCAGATGGGAAAAGATGTTTCTTCGTTGAAAAGATGGATATTAACAACATATCTTCCCATTTAATTAAG
CATAACATAATATTTACAAATGAAGGAATTTGTGCCACAAGTGAAATAGGGGAATTATATTACTTTGTATCAGATTCAAAGGAGGAAGATATAATGTTCG
CACTTGAAGATTGCATCAAATTACTCCGTCCATACCCAAAAGGTTAAGCCAGAGGGGTCGATTTTTTTAGTTTCGATTTCTTTTTGAATTACACTCAACG
CCATAGGAACAAAAGGACTAAGATTCTTGAATTTTCTTATCATTTTTGCATGGACATTTATCCATGAAACTATTTTACCGTCCTGATCCTTCGCGGCAAA
ACAGAGAAGATCATAAGACAAATTGAAGGGATTCAAAGAATCTAATATTATGCTAAAACCGTTATATTGAATTGGCACGCTCTTGGTGATATTATTAAAA
TTTGCATTCTTCATAAAAAAATTGTTTTAAATATTTTTTTGGCTTTCTTTTTTAAAAAGGAGAGGGGGATTTTTTTCTAAAATTACAAAATCATTACGAT
TGGAGAGCTTTGTAAGTTGTTGATTGTTTGGTAGATCGAAATTGAGGGAATACC
Protein section
ORF number : 5
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
276 bp | 91 aa | 940 | 1215 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MTVSFIMPKKDFSQNALSIVELVTGEKIAKNSAAVSLGRLGGLKGGKARALKLTGEERSAIAKKAALSRWKKKQNEGLDFSKKQKRNISES
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
810 bp | 269 aa | 1300 | 2109 | + | No |
Chemistry : DDE
ORF sequence :
MNRLAHSKRVQMLSCLVDGCSMEATARIVHVAPNTVAKFLVDLGKACTRYQARVFENIFCKRIQCDEIWSFVGCKEKNVTNNGKRQGDTWTWIACDPDTK
LVPCWFIGRRDSESAKKFMRRLARHLSLGSTQITTDGLKAYINAIKEILWIETSYGMVEKKYDVSGDDHRTRYIGSEKTAIFGNPDPDTMNTSIVERQNL
TMRMSMRRFTRKTNGYSKKIANHRYAIALHFMYYNFARIHSTLNTTPAVAAGIANHVWSLDKILKLIER
LVPCWFIGRRDSESAKKFMRRLARHLSLGSTQITTDGLKAYINAIKEILWIETSYGMVEKKYDVSGDDHRTRYIGSEKTAIFGNPDPDTMNTSIVERQNL
TMRMSMRRFTRKTNGYSKKIANHRYAIALHFMYYNFARIHSTLNTTPAVAAGIANHVWSLDKILKLIER
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
561 bp | 186 aa | 2344 | 2904 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGFYGSCSDPNKKIESVMKTAKNKNIIKLILFLIGMGFLTVGCEKQHSSFQVEDNSQDPTALLRARLTKLKSFAIDSDAKNPGAKSSIFPKISYDVKQTN
SMVSPYIGTVEIHEISYEVDSNGINREKGWRGLKITLAFQQNEWVVKQVRVKTYTSSDFQQYIEDYRDAYNSEIAQAKIILWMFGD
SMVSPYIGTVEIHEISYEVDSNGINREKGWRGLKITLAFQQNEWVVKQVRVKTYTSSDFQQYIEDYRDAYNSEIAQAKIILWMFGD
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
297 bp | 98 aa | 2957 | 3253 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKPEYQQILKIIFLAVVVPVMGQADVKYAPLQSSIVKVSNIRRTAAIEGDWKEGIDEAWKDAKKKAFEKALNAYKITSQRIGVKGKMRRVKITIEWTE
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
294 bp | 97 aa | 3914 | 3621 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MKNANFNNITKSVPIQYNGFSIILDSLNPFNLSYDLLCFAAKDQDGKIVSWINVHAKMIRKFKNLSPFVPMALSVIQKEIETKKIDPSGLTFWVWTE
Blast result :
Comments
ISOpb1 is 40% aa similar to ISLysp1.
The transposase is the second ORF, others are passengers genes.
The transposase is the second ORF, others are passengers genes.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Schmidt,T. and Richardson,P.(2007) Direct submission GenBank.