ISMrsp5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAXY00000000 | ND | Marinobacter sp. | Marinobacter sp. ELB17 |
DNA section
IS Length : 1738 bp
Ends
IR Length : 16
IRL : GTAACTATTCAGCTCAAAAAACCTGTGAAAGTTCTTGACAGGGTTTTTGC
IRR : GTAACTATTCAGCTCATATTCACCATGATCATTAAAATAGAGTCTCATCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AAGTTTGATC | CTGAATTGAA | 0 |
DNA sequence
GTAACTATTCAGCTCAAAAAACCTGTGAAAGTTCTTGACAGGGTTTTTGCCTGAATCTTTCGACTTTATCGGCATACGCACTGATGCAACCAGACAGGCT
ATAACCGACGACATAGGGTCCGCTGAAAGGCTGTAATTACCGATACCGATCACGGGACGGCATCGATTTTTTAATCGCCGTATAAGAGCGCTCAGAGCCA
AAAATGTCGCCCTGAAAACCCGTGCGATAATGGCTGTCTTACAAAGCCATCCCGGTGGGGGCAGACATTGAAAATAGACAATATCGACGTTGATTCGGCA
ATCGCCTCCGTCAAGAACCTTCTTGAGAAAGAGCGTGACCTGTCGCCTTCACTCAAGGCCGCTCTGGAAGTGCTGCTCGTTTTGGTGGCGCTACTGCTCA
ACCGCACGACGCTCAATAGCAAAAATAGTCGTAAGCCGCCTTCAACGGATCCGAACCGTGACAAATCTTCCAAAAAGGGTTCCAGCAATAGAAAACCCGG
CGGACAGAAGGGGCGTATCGGAACCACCTTGCAGCAGGTCGATGGTCCTGACGCAGTGAAAGAGCTGAAAGTCGATCGACGCTCTCTGCCAAAAGGACGG
CGGTATCAAGAGGACGGTTATGAAACACGGCAGGTCATCGATATTGATATCGCGCGATTCGTGACTGAATACCGAGCACAGGTTATTAAAGACGACCAGG
GGAATCGATTTGTTGCTGCCTTTCCGGACAGGGTCAGTCAGTCGGTTCAGTATGGCATCGGCATCAAGGCCAATGCGGTCTATATGTCGCAGTTTCAGCT
GTTGCCCTATGACCGAATCCGTGACCACTTTCAGGAGCAGATGGGCATTCCGGTCAGTGCCGGCGCTGTCTTCAATTTCAACAAAGAGGCTTACGAGAAG
CTGGATCATTTCGAGCAGTGGGCGAAAGCTCAGCTCGCCAAATCTGAGCTCATGCATGTTGATGAGACCGGCATCAACCTGGACGGGAAGCGCCACTGGT
TGCACTGCGCGTCCAATAGCGCATTGACGCTGTTCTATCCCCACACCAAGCGTGGCACCGAGGCCATGGACGAGATGGGCGTCTTACCCTTCTTCAGTGG
GGTGCTGTGTCACGATCATTGGAAGCCGTACTACCGTTACGCGTGCACCCATTCCCTGTGCAATGCGCACCATCTTCGGGAGCTGGAGAGGGCATGGGAG
CAGGACGATCAACACTGGGCCAAGGCGATGAAAGTACTGCTGATCGATATGAACAAAACGGTAGCGGATGCCGGTGGCCGCTTGCCAGCCACTGATGCTG
AACGGTGGCGACAGCGCTATCGACAACGTCTCGAAGAGGCAGATATCGAATGTCCGCCTCCCGATAAGAGCCTGCGAGAGGCAGGGAAACGAGGCAGGCT
AAAACGATCAAAAGCCCGAAACTTGCTGGAAAGGTTGCGAAACTTTGAGCACGACGTTCTGCGTTTTATGGATGTCGAGTACGTCCCCTTCACTAACAAT
CAGGGGGAGAACGACCTGCGCATGACGAAAGTGCAGCAGAAAATATCCGGTTGTTTTCGATCCATGGCGGGGGCGAAGATCTTTTGTCGTGTTCGCAGTT
ACCTGTCAACGTGCCGTAAGCAGGGGGTATCAGCCACAGAGGCTCTGGCTTTACTCTTTCAGGGGAAAAGCCCTGCGTTTATGGATACCGATGAGACTCT
ATTTTAATGATCATGGTGAATATGAGCTGAATAGTTAC
ATAACCGACGACATAGGGTCCGCTGAAAGGCTGTAATTACCGATACCGATCACGGGACGGCATCGATTTTTTAATCGCCGTATAAGAGCGCTCAGAGCCA
AAAATGTCGCCCTGAAAACCCGTGCGATAATGGCTGTCTTACAAAGCCATCCCGGTGGGGGCAGACATTGAAAATAGACAATATCGACGTTGATTCGGCA
ATCGCCTCCGTCAAGAACCTTCTTGAGAAAGAGCGTGACCTGTCGCCTTCACTCAAGGCCGCTCTGGAAGTGCTGCTCGTTTTGGTGGCGCTACTGCTCA
ACCGCACGACGCTCAATAGCAAAAATAGTCGTAAGCCGCCTTCAACGGATCCGAACCGTGACAAATCTTCCAAAAAGGGTTCCAGCAATAGAAAACCCGG
CGGACAGAAGGGGCGTATCGGAACCACCTTGCAGCAGGTCGATGGTCCTGACGCAGTGAAAGAGCTGAAAGTCGATCGACGCTCTCTGCCAAAAGGACGG
CGGTATCAAGAGGACGGTTATGAAACACGGCAGGTCATCGATATTGATATCGCGCGATTCGTGACTGAATACCGAGCACAGGTTATTAAAGACGACCAGG
GGAATCGATTTGTTGCTGCCTTTCCGGACAGGGTCAGTCAGTCGGTTCAGTATGGCATCGGCATCAAGGCCAATGCGGTCTATATGTCGCAGTTTCAGCT
GTTGCCCTATGACCGAATCCGTGACCACTTTCAGGAGCAGATGGGCATTCCGGTCAGTGCCGGCGCTGTCTTCAATTTCAACAAAGAGGCTTACGAGAAG
CTGGATCATTTCGAGCAGTGGGCGAAAGCTCAGCTCGCCAAATCTGAGCTCATGCATGTTGATGAGACCGGCATCAACCTGGACGGGAAGCGCCACTGGT
TGCACTGCGCGTCCAATAGCGCATTGACGCTGTTCTATCCCCACACCAAGCGTGGCACCGAGGCCATGGACGAGATGGGCGTCTTACCCTTCTTCAGTGG
GGTGCTGTGTCACGATCATTGGAAGCCGTACTACCGTTACGCGTGCACCCATTCCCTGTGCAATGCGCACCATCTTCGGGAGCTGGAGAGGGCATGGGAG
CAGGACGATCAACACTGGGCCAAGGCGATGAAAGTACTGCTGATCGATATGAACAAAACGGTAGCGGATGCCGGTGGCCGCTTGCCAGCCACTGATGCTG
AACGGTGGCGACAGCGCTATCGACAACGTCTCGAAGAGGCAGATATCGAATGTCCGCCTCCCGATAAGAGCCTGCGAGAGGCAGGGAAACGAGGCAGGCT
AAAACGATCAAAAGCCCGAAACTTGCTGGAAAGGTTGCGAAACTTTGAGCACGACGTTCTGCGTTTTATGGATGTCGAGTACGTCCCCTTCACTAACAAT
CAGGGGGAGAACGACCTGCGCATGACGAAAGTGCAGCAGAAAATATCCGGTTGTTTTCGATCCATGGCGGGGGCGAAGATCTTTTGTCGTGTTCGCAGTT
ACCTGTCAACGTGCCGTAAGCAGGGGGTATCAGCCACAGAGGCTCTGGCTTTACTCTTTCAGGGGAAAAGCCCTGCGTTTATGGATACCGATGAGACTCT
ATTTTAATGATCATGGTGAATATGAGCTGAATAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1440 bp | 479 aa | 268 | 1707 | + | No |
Chemistry : DDE
ORF sequence :
LKIDNIDVDSAIASVKNLLEKERDLSPSLKAALEVLLVLVALLLNRTTLNSKNSRKPPSTDPNRDKSSKKGSSNRKPGGQKGRIGTTLQQVDGPDAVKEL
KVDRRSLPKGRRYQEDGYETRQVIDIDIARFVTEYRAQVIKDDQGNRFVAAFPDRVSQSVQYGIGIKANAVYMSQFQLLPYDRIRDHFQEQMGIPVSAGA
VFNFNKEAYEKLDHFEQWAKAQLAKSELMHVDETGINLDGKRHWLHCASNSALTLFYPHTKRGTEAMDEMGVLPFFSGVLCHDHWKPYYRYACTHSLCNA
HHLRELERAWEQDDQHWAKAMKVLLIDMNKTVADAGGRLPATDAERWRQRYRQRLEEADIECPPPDKSLREAGKRGRLKRSKARNLLERLRNFEHDVLRF
MDVEYVPFTNNQGENDLRMTKVQQKISGCFRSMAGAKIFCRVRSYLSTCRKQGVSATEALALLFQGKSPAFMDTDETLF
KVDRRSLPKGRRYQEDGYETRQVIDIDIARFVTEYRAQVIKDDQGNRFVAAFPDRVSQSVQYGIGIKANAVYMSQFQLLPYDRIRDHFQEQMGIPVSAGA
VFNFNKEAYEKLDHFEQWAKAQLAKSELMHVDETGINLDGKRHWLHCASNSALTLFYPHTKRGTEAMDEMGVLPFFSGVLCHDHWKPYYRYACTHSLCNA
HHLRELERAWEQDDQHWAKAMKVLLIDMNKTVADAGGRLPATDAERWRQRYRQRLEEADIECPPPDKSLREAGKRGRLKRSKARNLLERLRNFEHDVLRF
MDVEYVPFTNNQGENDLRMTKVQQKISGCFRSMAGAKIFCRVRSYLSTCRKQGVSATEALALLFQGKSPAFMDTDETLF
Blast result :
Comments
ISMrsp5 is 57% aa similar to ISMac24.
References
1] ISfinder annotation (2008).
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct Submission GenBank.
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct Submission GenBank.