ISMbu12
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007955 | ND | Methanococcoides burtonii | Methanococcoides burtonii DSM 6242 |
DNA section
IS Length : 1633 bp
Ends
IR Length : 19/21
IRL : GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTAT
IRR : GTAACTATTCAGCCTACCTATAGTCAATCCTGTATTACCAACCTTTACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGAACTTAA | CAATTTCT | TTTGATATTT | 8 |
DNA sequence
GTAACTATTCAGCCACCTTTGCGTGCTAAAATCCCCCCACCTCAATCTATTTCATCTTCTGACATGGATTTTTACGAAAAAAGCAAGTAGTAGCATTCTA
TTTAAGTTCACACCCAAAAAATCAATTGGTTTTGCCAAACAGGAGGTGAATGAACACGAAACGCAAAGAAATCCTAGCAGTTTATGAACAAGGTCCCGAA
GCAGTTGTCACTCTTGTCACTACATTGTACGACATCATTGCTGAACAACAAAAGATCATAGAACTACAAGCTGCCAGAATAACCGAACTCGAAGAACGAG
TTAAAAAGTTGGAAGAGCAACTCAAAAAAAACAGCCGAAACAGCAGTAAACCACCTTCAACTGATGTTTTTATTAATGAGAAACCAAAAACAAAAAGCAG
ACGAAAAAAGAGTGGAAAGAAACCAGGTGGTCAGAAAGACCATCCTGGAACTACTCTCAGAATGGTAGATGTTCCTGACGAAGTTATAATTCACAAAGTA
CACAAATGTAGCAATTGTGAAAGATCGCTTGAAGATATAGAAGTTAAAGATCATGAAAAAAGGCAAGTATTTGACATACCTCCCATTAAACTTCAAGTAA
CAGAACATCGTGCTGAAATCAAGTCCTGTCCTCACTGCGGTTGCAAGAACAAAGCTACTTTTTCAGAAAAGGTTAAACAACCCACGCAATATGGCTTACG
TCTTGCATCATTAGCAGTCTACTTACATGATTATCAATTACTTCCTTATGATCGCAGCTGTGAATTGCTAGCTGATGTTTGTGGATGTGAAATAAGTCCC
GCTACTTTGGCTAGGGCAGAGAAGACATGTTTTGAAAAACTTGAAGATTTCGAACAGCAGATCAAGAACTTCTTAATAGAATCTCCTGTGATAAATTGTG
ATGAAACTGGTATGAGGATAGAAGGAAAACGACAGTGGTTACATGTTGCTTCTACAAACAAAATGACATGTTATTATCCTCATCAAAAAAGAGGCTCTGA
CGCAATGAATGCGATGGGAATCTTACCAAATTTTAATGGTACAGTAGTTCATGATTTCTGGAAATCATATTACAAATATGATTGTGATCATTCGATCTGT
AATGCTCATCTATTGCGAGAATTAACAAGTGTAAGCGAGAACGATGATCAATTGTGGTCAAAAGCTATGAATATTCTACTTATTGATGTCAAAAAGTCAG
TTGACCAGATCCGAGAAATGTCTGGTTGTATGAAACCAGAGAGAATTAAAGAGTTTGAAGATTGGTACGGCCAGATAATTCATATTGGGATAGAAGAAAA
TCCTCAACTTCAAGCCAAATCAAAAAATGATATTCTCAGATTTATGCATGATCTAAAAGTTCCATTTGAGAATAATCTTGCAGAAAGGGATGTGAGAATG
ATGAAAGTACAGCAGAAGATATCAGGTACATTCCGAAGTATGCAAGGAGCATTAATTTTCTCGCGGGTAAGAAGTTACATTTCTACTGTTAAGAAGAATC
AAGTTCCTGTGATGGATGCAATTCGAAATGCAATTGCTGGAATGCCATTTATTCCAACAATTGTTTGAGCTTCTAATTTTTTTGTGTAAAGGTTGGTAAT
ACAGGATTGACTATAGGTAGGCTGAATAGTTAC
TTTAAGTTCACACCCAAAAAATCAATTGGTTTTGCCAAACAGGAGGTGAATGAACACGAAACGCAAAGAAATCCTAGCAGTTTATGAACAAGGTCCCGAA
GCAGTTGTCACTCTTGTCACTACATTGTACGACATCATTGCTGAACAACAAAAGATCATAGAACTACAAGCTGCCAGAATAACCGAACTCGAAGAACGAG
TTAAAAAGTTGGAAGAGCAACTCAAAAAAAACAGCCGAAACAGCAGTAAACCACCTTCAACTGATGTTTTTATTAATGAGAAACCAAAAACAAAAAGCAG
ACGAAAAAAGAGTGGAAAGAAACCAGGTGGTCAGAAAGACCATCCTGGAACTACTCTCAGAATGGTAGATGTTCCTGACGAAGTTATAATTCACAAAGTA
CACAAATGTAGCAATTGTGAAAGATCGCTTGAAGATATAGAAGTTAAAGATCATGAAAAAAGGCAAGTATTTGACATACCTCCCATTAAACTTCAAGTAA
CAGAACATCGTGCTGAAATCAAGTCCTGTCCTCACTGCGGTTGCAAGAACAAAGCTACTTTTTCAGAAAAGGTTAAACAACCCACGCAATATGGCTTACG
TCTTGCATCATTAGCAGTCTACTTACATGATTATCAATTACTTCCTTATGATCGCAGCTGTGAATTGCTAGCTGATGTTTGTGGATGTGAAATAAGTCCC
GCTACTTTGGCTAGGGCAGAGAAGACATGTTTTGAAAAACTTGAAGATTTCGAACAGCAGATCAAGAACTTCTTAATAGAATCTCCTGTGATAAATTGTG
ATGAAACTGGTATGAGGATAGAAGGAAAACGACAGTGGTTACATGTTGCTTCTACAAACAAAATGACATGTTATTATCCTCATCAAAAAAGAGGCTCTGA
CGCAATGAATGCGATGGGAATCTTACCAAATTTTAATGGTACAGTAGTTCATGATTTCTGGAAATCATATTACAAATATGATTGTGATCATTCGATCTGT
AATGCTCATCTATTGCGAGAATTAACAAGTGTAAGCGAGAACGATGATCAATTGTGGTCAAAAGCTATGAATATTCTACTTATTGATGTCAAAAAGTCAG
TTGACCAGATCCGAGAAATGTCTGGTTGTATGAAACCAGAGAGAATTAAAGAGTTTGAAGATTGGTACGGCCAGATAATTCATATTGGGATAGAAGAAAA
TCCTCAACTTCAAGCCAAATCAAAAAATGATATTCTCAGATTTATGCATGATCTAAAAGTTCCATTTGAGAATAATCTTGCAGAAAGGGATGTGAGAATG
ATGAAAGTACAGCAGAAGATATCAGGTACATTCCGAAGTATGCAAGGAGCATTAATTTTCTCGCGGGTAAGAAGTTACATTTCTACTGTTAAGAAGAATC
AAGTTCCTGTGATGGATGCAATTCGAAATGCAATTGCTGGAATGCCATTTATTCCAACAATTGTTTGAGCTTCTAATTTTTTTGTGTAAAGGTTGGTAAT
ACAGGATTGACTATAGGTAGGCTGAATAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 150 | 1568 | + | No |
Chemistry : DDE
ORF sequence :
MNTKRKEILAVYEQGPEAVVTLVTTLYDIIAEQQKIIELQAARITELEERVKKLEEQLKKNSRNSSKPPSTDVFINEKPKTKSRRKKSGKKPGGQKDHPG
TTLRMVDVPDEVIIHKVHKCSNCERSLEDIEVKDHEKRQVFDIPPIKLQVTEHRAEIKSCPHCGCKNKATFSEKVKQPTQYGLRLASLAVYLHDYQLLPY
DRSCELLADVCGCEISPATLARAEKTCFEKLEDFEQQIKNFLIESPVINCDETGMRIEGKRQWLHVASTNKMTCYYPHQKRGSDAMNAMGILPNFNGTVV
HDFWKSYYKYDCDHSICNAHLLRELTSVSENDDQLWSKAMNILLIDVKKSVDQIREMSGCMKPERIKEFEDWYGQIIHIGIEENPQLQAKSKNDILRFMH
DLKVPFENNLAERDVRMMKVQQKISGTFRSMQGALIFSRVRSYISTVKKNQVPVMDAIRNAIAGMPFIPTIV
TTLRMVDVPDEVIIHKVHKCSNCERSLEDIEVKDHEKRQVFDIPPIKLQVTEHRAEIKSCPHCGCKNKATFSEKVKQPTQYGLRLASLAVYLHDYQLLPY
DRSCELLADVCGCEISPATLARAEKTCFEKLEDFEQQIKNFLIESPVINCDETGMRIEGKRQWLHVASTNKMTCYYPHQKRGSDAMNAMGILPNFNGTVV
HDFWKSYYKYDCDHSICNAHLLRELTSVSENDDQLWSKAMNILLIDVKKSVDQIREMSGCMKPERIKEFEDWYGQIIHIGIEENPQLQAKSKNDILRFMH
DLKVPFENNLAERDVRMMKVQQKISGTFRSMQGALIFSRVRSYISTVKKNQVPVMDAIRNAIAGMPFIPTIV
Blast result :
Comments
ISMbu12 is 95% aa similar to ISMbu5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Kadner,K., Aerts,A., Dehal,P., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Franzmann,P., Thomas,T., Saunders,N., Cavicchioli,R., Sowers,K. and Richardson,P. (2006) Direct Submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).