ISMpo2
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010725 | ND | Methylobacterium populi | Methylobacterium populi BJ001 |
DNA section
IS Length : 3089 bp
Ends
IR Length : 27/33
IRL : GGCGATTATATCGTTGACACATACGACAACCGGAAGTAGGTTTTAGCTCT
IRR : GGCAATTATACCGTTTGCACATACGCGACCGGCAATGGCCGCTTTTCGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCTCTCGGGT | AAACAAAT | GGGCTGGAGAGCGC | 8 |
DNA sequence
GGCGATTATATCGTTGACACATACGACAACCGGAAGTAGGTTTTAGCTCTAGGAGCTAAACCGATGTCCGCCCTGTCCGCCGCCTTCTTCCACGACGAGG
CCGCCGCCTTCGCCAAGCTGGAAAGCCTGATTTGGCCGGAAGGCCCCGTCTGCCCTCACTGCGGCGGCATGGGCCGGATCACGAACGTCAAGGGCGGTCG
CATGGGCCTTCGCCGTTGCGGCGACTGCAAGAAGCAGTTCACCGTCACGGTCGGCACGGTCTTCGAGTCCAGCCATGTAAAGCTGCACCTGTGGCTCCAG
GCTGCTCACCTTCTCGCGTCCAGCAAGAAGGGCTTCTCCGCGCATCAACTGCACCGAACCCTCGGCGTCACCTACAAGACCGCGTGGTTCATGTTCCATC
GGCTGCGCGAGGCGATGCGCGACGGCGCTCTTGCTCCAATGGGCGGTCTGGATGGCCCGGCCGGTGGTGCTGGCATCGTGGAAGCCGACGAGACCTTCAT
CGGCCGTGAGCCGGGCAAGCCGAAGAAGCGCGCCTATCACCACAAGATGAAGGTGCTGAGCCTCGTGGATCGTGACACGAAGCAGGTTCGCTCCGTCGTC
GTGGACGATCTAAAGCCCGATACGGTGAAGCCGATCCTCGCAGCGAACATCGCCAAGGAAGCCAGCCTCTTCACCGACGAGGCGGGCCACTACGTGAAGC
TCGGCAAGGACTTCATCGAGCACCAGATCACGTCCCACGGCAAAGGCGAGTACGTGCGCGGTATCGTCCACACGAACACCGTCGAGGGCTACTTCTCCGT
CTTCAAGCGCGGCATGAAGGGCGTCTATCAGCACTGCGGCAAGCAGCACCTTCACCGCTACCTCGCCGAGTTCGATTTCCGGTACAATAACCGGGCGAAG
CTCGGAGTCGGCGATGTCGCCCGGACAGAGCGCGCCTTATATGGTATCATCGGGAAGCGGCTGACGTACCGGTCAGCTAACAGGCCGCAAGCGATAAATG
GATGAGAGCCGCATAAGCCTGACCATCGTCCCCTCCGGGGGAGATGAAGGATCAGTTCTTGTCAGCGACTTCCTCAAGCAGGTTGACGCGTTGAAGAAGC
TTGTCGGTTATGCATCTCGGACCAACACTGTCGAGGCAAGGATAGTTGGGCTGTCCATGAACAGCCCGGCCTCAGTCGAAATTGAAGCCTTCAACGCCTC
CAACAATGCGGCCGTCCCGGTAGGTGCGTTTTTTCACGATGTATATAATGTTGTTGAAAAGGCTGCGACGCCCATCAATCTAGAGCGTGAGGTTTTCGAT
ACCATCAAAGATTTTGCGAGCGTTGTTGGTAAAGGCGTCAATAGCACCATCATTGTTGCCGCAGGCAACGAGATTAAATTCGATATTATCGCAAAGGACC
GCATAGACGGAATATTCGGCCAAGATTATTCTCGCCATGGCACGGCTGACGGCATGCTTGAGGCCGTTAATATTCATGGGAAGATCAACAATTGCGCTCT
ATATCCGCTTGTTGGGCCAAAGAGAATTAGTTGCAGGTTCGAAGAGCATCTATTTAAGAAGATTAAGCCGGCGCTCGGCAAATACGTCATGATAGAGGGC
ATTTTGAAATATCGATGGCGAGAGAAGTTCCCTCACGCCGCCGACATTCACAAGATTGATGTGCTTCCAAGCTGGGACGAGCAGCCAAGCTTTGAAGATA
TCTTAGGTATGGCTTCCAACGCGACGCATGGCGAAGCTTCAGAGGAATTCGTGAAGGCGCGTCGGTATGGCTGGTAGGCCGCCAGTTATATACTTGGATG
CCTGCATTTTTATCTCGATGATCACGAGAGAGCAGCGCCGTGGGGATGAGGCGTCTCAAGTTGCAGGGCTCGTTCCAGCAATCGAGCGACGTGAGATAAT
TCCGGTTACCTCGGCTCTAACTCGAAACGAGGTGCTGGAATGCACCTTGGACGCTCAACAGAAAAACATACTGCGTAAGCTGCTCAATCCGCCGAAGGTT
CAGGTCAAGGATGTAAGCTCACCCATCTTGGATCTTAGCCAGGAGATAAGAGAATACTATCAGGCAATGAAGATTGCCAGAACTACTAACCTGCCGACGG
TCGAGACCCCTGATGCAATTCATTTGGCGACAGCAATATATTATGACTGCGATATGCTATTCACATTTGACGAGGCTGATCGAGAAACAGGTCGGTTGCC
AAAGCGAGGGCTTATCCCACTGAGTGGGATTGTTGCCGGTCGATATCCGATGGTGATTTGCAAGCCTACCGTCAGAGCGCCGGGTCTGTCCGTATGAAGA
ACGACATCCCCACCAAGCCCAAGCCTACCAAGCTCGGCGCTGAGAAGCTGACGCCCGAAGAGCAGAAGCGCCGCTTCATCGAAGCCGCCCGCGAGGCTGG
GGCCAGCGAGAACGAAGCGGACTTAGATGCGGCGTTGAAGCGGATCGCGAAGGCGAAGCAGGAGAGGCTGTAAGCCCCCCCCCGCCCCGCAGAACGCAGG
CTACTTCGCTTTGTCGGCGATGCCCTTCAGGCCAGCCTCGTAAACGCCCGCGATGGCCTCTTTTGCCTTGTCGTCGGGTGCACCCTTAGCCTTGAAGTTG
CCGGTCCAAGTGACTTTGGAGCCGCTGCCATCCTTCTCGACCATGATCGTGGACTTATAGTCCTCAACCGGCAGAGGCCCCGAGAGGATCGTGTACGTGT
AATCCATCTTTTTGTCGTCGCGGGATTGCTCCTGCTCCACGATGGTGCCGCCGCCCTTCAGTGACAGGGTGCGTTCTTCCTTGTCGCCCTTCTTGGATAG
TGCGCACTTCTCCACAACGGGGTGCCAGTCGCCGATGCCGCAGAAGCCACCGATGGTCTTCCAAACCTTGTCCGGCGAGGCCGCGACGGTCGTTGTCTTC
GTCACCTCAAGGGCAAAGGCGGGGGTAGTAACCAGAGCCATGAGAGCCACAGCCGGCAGGGCAATCTTCAACATTTAGCGTTTCCTCAGCAGGGTTCTTG
TAAGCCCCGGAGATGGGGTGGCCTGCTATATAGCGCGCAATCGAAAAGCGGCCATTGCCGGTCGCGTATGTGCAAACGGTATAATTGCC
CCGCCGCCTTCGCCAAGCTGGAAAGCCTGATTTGGCCGGAAGGCCCCGTCTGCCCTCACTGCGGCGGCATGGGCCGGATCACGAACGTCAAGGGCGGTCG
CATGGGCCTTCGCCGTTGCGGCGACTGCAAGAAGCAGTTCACCGTCACGGTCGGCACGGTCTTCGAGTCCAGCCATGTAAAGCTGCACCTGTGGCTCCAG
GCTGCTCACCTTCTCGCGTCCAGCAAGAAGGGCTTCTCCGCGCATCAACTGCACCGAACCCTCGGCGTCACCTACAAGACCGCGTGGTTCATGTTCCATC
GGCTGCGCGAGGCGATGCGCGACGGCGCTCTTGCTCCAATGGGCGGTCTGGATGGCCCGGCCGGTGGTGCTGGCATCGTGGAAGCCGACGAGACCTTCAT
CGGCCGTGAGCCGGGCAAGCCGAAGAAGCGCGCCTATCACCACAAGATGAAGGTGCTGAGCCTCGTGGATCGTGACACGAAGCAGGTTCGCTCCGTCGTC
GTGGACGATCTAAAGCCCGATACGGTGAAGCCGATCCTCGCAGCGAACATCGCCAAGGAAGCCAGCCTCTTCACCGACGAGGCGGGCCACTACGTGAAGC
TCGGCAAGGACTTCATCGAGCACCAGATCACGTCCCACGGCAAAGGCGAGTACGTGCGCGGTATCGTCCACACGAACACCGTCGAGGGCTACTTCTCCGT
CTTCAAGCGCGGCATGAAGGGCGTCTATCAGCACTGCGGCAAGCAGCACCTTCACCGCTACCTCGCCGAGTTCGATTTCCGGTACAATAACCGGGCGAAG
CTCGGAGTCGGCGATGTCGCCCGGACAGAGCGCGCCTTATATGGTATCATCGGGAAGCGGCTGACGTACCGGTCAGCTAACAGGCCGCAAGCGATAAATG
GATGAGAGCCGCATAAGCCTGACCATCGTCCCCTCCGGGGGAGATGAAGGATCAGTTCTTGTCAGCGACTTCCTCAAGCAGGTTGACGCGTTGAAGAAGC
TTGTCGGTTATGCATCTCGGACCAACACTGTCGAGGCAAGGATAGTTGGGCTGTCCATGAACAGCCCGGCCTCAGTCGAAATTGAAGCCTTCAACGCCTC
CAACAATGCGGCCGTCCCGGTAGGTGCGTTTTTTCACGATGTATATAATGTTGTTGAAAAGGCTGCGACGCCCATCAATCTAGAGCGTGAGGTTTTCGAT
ACCATCAAAGATTTTGCGAGCGTTGTTGGTAAAGGCGTCAATAGCACCATCATTGTTGCCGCAGGCAACGAGATTAAATTCGATATTATCGCAAAGGACC
GCATAGACGGAATATTCGGCCAAGATTATTCTCGCCATGGCACGGCTGACGGCATGCTTGAGGCCGTTAATATTCATGGGAAGATCAACAATTGCGCTCT
ATATCCGCTTGTTGGGCCAAAGAGAATTAGTTGCAGGTTCGAAGAGCATCTATTTAAGAAGATTAAGCCGGCGCTCGGCAAATACGTCATGATAGAGGGC
ATTTTGAAATATCGATGGCGAGAGAAGTTCCCTCACGCCGCCGACATTCACAAGATTGATGTGCTTCCAAGCTGGGACGAGCAGCCAAGCTTTGAAGATA
TCTTAGGTATGGCTTCCAACGCGACGCATGGCGAAGCTTCAGAGGAATTCGTGAAGGCGCGTCGGTATGGCTGGTAGGCCGCCAGTTATATACTTGGATG
CCTGCATTTTTATCTCGATGATCACGAGAGAGCAGCGCCGTGGGGATGAGGCGTCTCAAGTTGCAGGGCTCGTTCCAGCAATCGAGCGACGTGAGATAAT
TCCGGTTACCTCGGCTCTAACTCGAAACGAGGTGCTGGAATGCACCTTGGACGCTCAACAGAAAAACATACTGCGTAAGCTGCTCAATCCGCCGAAGGTT
CAGGTCAAGGATGTAAGCTCACCCATCTTGGATCTTAGCCAGGAGATAAGAGAATACTATCAGGCAATGAAGATTGCCAGAACTACTAACCTGCCGACGG
TCGAGACCCCTGATGCAATTCATTTGGCGACAGCAATATATTATGACTGCGATATGCTATTCACATTTGACGAGGCTGATCGAGAAACAGGTCGGTTGCC
AAAGCGAGGGCTTATCCCACTGAGTGGGATTGTTGCCGGTCGATATCCGATGGTGATTTGCAAGCCTACCGTCAGAGCGCCGGGTCTGTCCGTATGAAGA
ACGACATCCCCACCAAGCCCAAGCCTACCAAGCTCGGCGCTGAGAAGCTGACGCCCGAAGAGCAGAAGCGCCGCTTCATCGAAGCCGCCCGCGAGGCTGG
GGCCAGCGAGAACGAAGCGGACTTAGATGCGGCGTTGAAGCGGATCGCGAAGGCGAAGCAGGAGAGGCTGTAAGCCCCCCCCCGCCCCGCAGAACGCAGG
CTACTTCGCTTTGTCGGCGATGCCCTTCAGGCCAGCCTCGTAAACGCCCGCGATGGCCTCTTTTGCCTTGTCGTCGGGTGCACCCTTAGCCTTGAAGTTG
CCGGTCCAAGTGACTTTGGAGCCGCTGCCATCCTTCTCGACCATGATCGTGGACTTATAGTCCTCAACCGGCAGAGGCCCCGAGAGGATCGTGTACGTGT
AATCCATCTTTTTGTCGTCGCGGGATTGCTCCTGCTCCACGATGGTGCCGCCGCCCTTCAGTGACAGGGTGCGTTCTTCCTTGTCGCCCTTCTTGGATAG
TGCGCACTTCTCCACAACGGGGTGCCAGTCGCCGATGCCGCAGAAGCCACCGATGGTCTTCCAAACCTTGTCCGGCGAGGCCGCGACGGTCGTTGTCTTC
GTCACCTCAAGGGCAAAGGCGGGGGTAGTAACCAGAGCCATGAGAGCCACAGCCGGCAGGGCAATCTTCAACATTTAGCGTTTCCTCAGCAGGGTTCTTG
TAAGCCCCGGAGATGGGGTGGCCTGCTATATAGCGCGCAATCGAAAAGCGGCCATTGCCGGTCGCGTATGTGCAAACGGTATAATTGCC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 64 | 1005 | + | No |
Chemistry : DDE
ORF sequence :
MSALSAAFFHDEAAAFAKLESLIWPEGPVCPHCGGMGRITNVKGGRMGLRRCGDCKKQFTVTVGTVFESSHVKLHLWLQAAHLLASSKKGFSAHQLHRTL
GVTYKTAWFMFHRLREAMRDGALAPMGGLDGPAGGAGIVEADETFIGREPGKPKKRAYHHKMKVLSLVDRDTKQVRSVVVDDLKPDTVKPILAANIAKEA
SLFTDEAGHYVKLGKDFIEHQITSHGKGEYVRGIVHTNTVEGYFSVFKRGMKGVYQHCGKQHLHRYLAEFDFRYNNRAKLGVGDVARTERALYGIIGKRL
TYRSANRPQAING
GVTYKTAWFMFHRLREAMRDGALAPMGGLDGPAGGAGIVEADETFIGREPGKPKKRAYHHKMKVLSLVDRDTKQVRSVVVDDLKPDTVKPILAANIAKEA
SLFTDEAGHYVKLGKDFIEHQITSHGKGEYVRGIVHTNTVEGYFSVFKRGMKGVYQHCGKQHLHRYLAEFDFRYNNRAKLGVGDVARTERALYGIIGKRL
TYRSANRPQAING
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
780 bp | 259 aa | 998 | 1777 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDESRISLTIVPSGGDEGSVLVSDFLKQVDALKKLVGYASRTNTVEARIVGLSMNSPASVEIEAFNASNNAAVPVGAFFHDVYNVVEKAATPINLEREVF
DTIKDFASVVGKGVNSTIIVAAGNEIKFDIIAKDRIDGIFGQDYSRHGTADGMLEAVNIHGKINNCALYPLVGPKRISCRFEEHLFKKIKPALGKYVMIE
GILKYRWREKFPHAADIHKIDVLPSWDEQPSFEDILGMASNATHGEASEEFVKARRYGW
DTIKDFASVVGKGVNSTIIVAAGNEIKFDIIAKDRIDGIFGQDYSRHGTADGMLEAVNIHGKINNCALYPLVGPKRISCRFEEHLFKKIKPALGKYVMIE
GILKYRWREKFPHAADIHKIDVLPSWDEQPSFEDILGMASNATHGEASEEFVKARRYGW
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
474 bp | 157 aa | 2501 | 2974 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MLKIALPAVALMALVTTPAFALEVTKTTTVAASPDKVWKTIGGFCGIGDWHPVVEKCALSKKGDKEERTLSLKGGGTIVEQEQSRDDKKMDYTYTILSGP
LPVEDYKSTIMVEKDGSGSKVTWTGNFKAKGAPDDKAKEAIAGVYEAGLKGIADKAK
LPVEDYKSTIMVEKDGSGSKVTWTGNFKAKGAPDDKAKEAIAGVYEAGLKGIADKAK
Blast result :
Comments
ISMpo2 is 70% aa similar to ISNisp2.
The second and the third ORFs are passengers genes.
The second and the third ORFs are passengers genes.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.