ISMsm8
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1457 bp
Ends
IR Length : 29
IRL : GGGCGGATTCAACTGATCGTCGCAACACCTCGATTATGGAGGTGTGGAAT
IRR : GGGCGGATTCAACTGATCGTCGCAACACCGGCTTGATGAAGTGAGTGTAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGTGAACT | TGCGATCCGG | 0 | |
GCGGTGTATT | TGCGAGCCCG | 0 |
DNA sequence
GGGCGGATTCAACTGATCGTCGCAACACCTCGATTATGGAGGTGTGGAATGGGTGTGTTGGATCGGCAGCGGGCGGTTCGGTTGTATCGGGGACAGATTC
CGTCTCCGGGTCGGCCGTCGGTGGCGTGGCGTCAGGATCGGGTGAGGTTCTGGGCGGCGATCGCTGCGGGGGCTATGACTGAGGACGCCGCTGCCGAAGC
GGGCGTGTCGTCGCCGGTTGGGTTCCGCTGGTTCCGTCACGCTGGTGGAGTGAATCCATGCTTGCCAGAAACAGTTTCGGGACGTTACCTGTCCTCGGAT
GAACGTGAGAACATCGCGTTGTGGCGCGCCCAGGGCGCCGGGGTGCGTGAGATCGCCCGGCGGCTCAAGCGTGCACCGTCGACCATCTCACGGGAGTTGC
GCCGCAATGCCTCGACCCGCACCTATCGACTCGACTATAAGGCCTCCACTGCGCAGTGGCACGCCGAGCGGCGCGCCCGCCGCCCCAAGACCGCCAAGCT
CGTTAGCAACGACCGGCTGCGTCAGTACGTCCAGGACAAACTGTCCGGCGTCGTTCGCGGCGCTGATGGCCAGGTCATCGTCGGTCCCGCCGCCGCCCCG
TGGAAGGGACGCAACAAGCCGCACCGGGGTGATCGGGCCTGGGTGCAGGCATGGAGTCCAGAACAGATCGCTCGACGGCTCCCGCTGGACTTCCCCGATG
ATGTGACTATGCGGATCAGCCACGAGGCCATCTATCAAGCGCTGTACGTCGAATCTCGCGGTGCGCTGAAGCGGGATCTGGTCAGCTGCCTGCGCCGAGG
CCGGGCACTGCGGGTACCGCGGGCACGAACGCGGTCCAAGGCGTGGGCCCATGTCACCCCTGAGACGTTGATCAGCCAACGCCCACCCGAGGTCGATGAT
CGCGCTGTTCCCGGACATTGGGAGGGTGATCTCCTGATTGGCTTGCAGCGCAGTGCAATCGGCACGCTGGTCGAGCGCAGCAGCCGGTTCACCATGCTGG
TCCATCTGCCACGTGAAGTTGGTTACGGGATAATTCCGCGGACCAAGAACGGGCCGGCGTTGGCCGGCTATGGCGCCATCACGATGGCCAACGCTCTGGA
ACAGACGATCACCACGTTGCCCGCGCAACTGCGTCGGTCGTTGACCTGGGACCGGGGCAAGGAACTGTCGGCGCACGCCCAGTTCTCGGTCGCCTCCGGA
GTCAAGGTGTTCTTCGCTGATCCGAAGAGTCCGTGGCAGCGCGGTACCAATGAGAACACCAATGGCCTGTTACGCCAATACTTTCCAAAAGGGACCGACC
TCTCAAGATGGTCGGCCGAGGACGTGGCAGCGATCGCCCATACCCTCAACACCAGGCCGCGGAAAACCCTCGGCTGGCGCACTCCCGCGGAAGCCTTCGC
CGAACACCTACACTCACTTCATCAAGCCGGTGTTGCGACGATCAGTTGAATCCGCCC
CGTCTCCGGGTCGGCCGTCGGTGGCGTGGCGTCAGGATCGGGTGAGGTTCTGGGCGGCGATCGCTGCGGGGGCTATGACTGAGGACGCCGCTGCCGAAGC
GGGCGTGTCGTCGCCGGTTGGGTTCCGCTGGTTCCGTCACGCTGGTGGAGTGAATCCATGCTTGCCAGAAACAGTTTCGGGACGTTACCTGTCCTCGGAT
GAACGTGAGAACATCGCGTTGTGGCGCGCCCAGGGCGCCGGGGTGCGTGAGATCGCCCGGCGGCTCAAGCGTGCACCGTCGACCATCTCACGGGAGTTGC
GCCGCAATGCCTCGACCCGCACCTATCGACTCGACTATAAGGCCTCCACTGCGCAGTGGCACGCCGAGCGGCGCGCCCGCCGCCCCAAGACCGCCAAGCT
CGTTAGCAACGACCGGCTGCGTCAGTACGTCCAGGACAAACTGTCCGGCGTCGTTCGCGGCGCTGATGGCCAGGTCATCGTCGGTCCCGCCGCCGCCCCG
TGGAAGGGACGCAACAAGCCGCACCGGGGTGATCGGGCCTGGGTGCAGGCATGGAGTCCAGAACAGATCGCTCGACGGCTCCCGCTGGACTTCCCCGATG
ATGTGACTATGCGGATCAGCCACGAGGCCATCTATCAAGCGCTGTACGTCGAATCTCGCGGTGCGCTGAAGCGGGATCTGGTCAGCTGCCTGCGCCGAGG
CCGGGCACTGCGGGTACCGCGGGCACGAACGCGGTCCAAGGCGTGGGCCCATGTCACCCCTGAGACGTTGATCAGCCAACGCCCACCCGAGGTCGATGAT
CGCGCTGTTCCCGGACATTGGGAGGGTGATCTCCTGATTGGCTTGCAGCGCAGTGCAATCGGCACGCTGGTCGAGCGCAGCAGCCGGTTCACCATGCTGG
TCCATCTGCCACGTGAAGTTGGTTACGGGATAATTCCGCGGACCAAGAACGGGCCGGCGTTGGCCGGCTATGGCGCCATCACGATGGCCAACGCTCTGGA
ACAGACGATCACCACGTTGCCCGCGCAACTGCGTCGGTCGTTGACCTGGGACCGGGGCAAGGAACTGTCGGCGCACGCCCAGTTCTCGGTCGCCTCCGGA
GTCAAGGTGTTCTTCGCTGATCCGAAGAGTCCGTGGCAGCGCGGTACCAATGAGAACACCAATGGCCTGTTACGCCAATACTTTCCAAAAGGGACCGACC
TCTCAAGATGGTCGGCCGAGGACGTGGCAGCGATCGCCCATACCCTCAACACCAGGCCGCGGAAAACCCTCGGCTGGCGCACTCCCGCGGAAGCCTTCGC
CGAACACCTACACTCACTTCATCAAGCCGGTGTTGCGACGATCAGTTGAATCCGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1401 bp | 466 aa | 49 | 1449 | + | No |
Chemistry : DDE
ORF sequence :
MGVLDRQRAVRLYRGQIPSPGRPSVAWRQDRVRFWAAIAAGAMTEDAAAEAGVSSPVGFRWFRHAGGVNPCLPETVSGRYLSSDERENIALWRAQGAGVR
EIARRLKRAPSTISRELRRNASTRTYRLDYKASTAQWHAERRARRPKTAKLVSNDRLRQYVQDKLSGVVRGADGQVIVGPAAAPWKGRNKPHRGDRAWVQ
AWSPEQIARRLPLDFPDDVTMRISHEAIYQALYVESRGALKRDLVSCLRRGRALRVPRARTRSKAWAHVTPETLISQRPPEVDDRAVPGHWEGDLLIGLQ
RSAIGTLVERSSRFTMLVHLPREVGYGIIPRTKNGPALAGYGAITMANALEQTITTLPAQLRRSLTWDRGKELSAHAQFSVASGVKVFFADPKSPWQRGT
NENTNGLLRQYFPKGTDLSRWSAEDVAAIAHTLNTRPRKTLGWRTPAEAFAEHLHSLHQAGVATIS
EIARRLKRAPSTISRELRRNASTRTYRLDYKASTAQWHAERRARRPKTAKLVSNDRLRQYVQDKLSGVVRGADGQVIVGPAAAPWKGRNKPHRGDRAWVQ
AWSPEQIARRLPLDFPDDVTMRISHEAIYQALYVESRGALKRDLVSCLRRGRALRVPRARTRSKAWAHVTPETLISQRPPEVDDRAVPGHWEGDLLIGLQ
RSAIGTLVERSSRFTMLVHLPREVGYGIIPRTKNGPALAGYGAITMANALEQTITTLPAQLRRSLTWDRGKELSAHAQFSVASGVKVFFADPKSPWQRGT
NENTNGLLRQYFPKGTDLSRWSAEDVAAIAHTLNTRPRKTLGWRTPAEAFAEHLHSLHQAGVATIS
Blast result :
Comments
ISMsm8 is 59% aa similar to ISLxx5.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct Submission GenBank.