ISMsm6
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1765 bp
Ends
IR Length : 18/19
IRL : CCTGAGTTTGGACATGTCGGCCGGTTTTGGGGGCCGGTAGTCGTTTGACC
IRR : CCTGAGTTTGGACATTTCGCTTAGTACCCAGGGTTGAAGCCGAGGTTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCCACACG | AGCCCAGTGC | 0 |
DNA sequence
CCTGAGTTTGGACATGTCGGCCGGTTTTGGGGGCCGGTAGTCGTTTGACCTGCGGTGTTGCGCTGGCGGGTGGGTGTTTTGGGGTACTAACAGGGTAGGT
TCGTGCGGTGGCGTACGTGCGGAAAGTGCGCACTGCCTCGGGCGCGGTGGCGGTGCAGGTCGCCCGCAAAGACGCGGGCAAGGTGGTGATCCTGGCCCAT
CTCGGATCAGCTCATACCGATGCTGAGCTGGGCATTCTGCTCGAGCAAGCGAAGGCGATGGTCATCGGCGGCCAGGTCGCACTGGATTTCGAGGTGGCCG
CTCGGGCTCAATCGATGGCCGATGTCGCTGATTTCCGTGAACAGCGGGTGCTCGGCGAAAAGTCTGGGCCCTCGGCTGCAGCGCCGGTGGTGCCGCCAGG
GCGCACGGTCGGGGCCAGCTCGCGGCTGCTCTATGACCTACTCGGCCACGTCTATGACTGGCATGGTTTCGATACCGTCGGCGACGCAGTGTTCCGCGAT
CTGGTAATCGCCCGGATCGTGGAGCCGACCAGCAAGCTCGACGCGTCGCGGGTGTTGGCTGATCTGGGCGCCCAGCTGGTGTCCTACAAAACCATCGACC
GCCATGTCCGCACGATCCACGCCCGCGGGCACCGCGACGTGATCGCCGAGAAATGCTTCGCCTACGCCACCGACTGCGGCGGGCTGTCACTGATCTTGTA
TGACGTGACCACCCTGTATTTCGCCGCCGAATCCGAGGATTCGCTGCGCAAGGTTGGCTACTCCAAGGAACGTCGGGTCGATCCTCAAATTGTTGTCGGC
CTGTTGGTGGACCGCACCGGATTCCCGTTGGAGATCGGCTGTTTCGAAGGCAACACCGCCGAGACCACCACCATCGTGCCAATCATCACCAGCTTCCTGG
AACGTCACAACCTGGTCGGCACGCCGATGGTCGTGGCTGCCGATGCCGGCATGCTGTCCCAAACCAACCTGACCGCCCTCGATGAGCAGGAGTTGTCGTT
CATCGTGGGCTCTCGGATGACGAAGGCTCCCGGGGATCTGGAATCCCACTTCCATTGGAACGGTGACGTTTTCACCGACGGACAGATCATCGACACCGTC
ACGCCCCGACACGGCAACACCCGCGTCAACGACATCAAGAAGCGTGCCGAACCGGTCTGGGATCCCGAACGCGACACCGGGGCGTGGCGGGCCATCTGGT
CGTACTCGGCCAAACGCGCCCGCCGTGATCAAAAGACCCTGGCCGCTCAAGAAGCCCGGGCCCGGGCCATCGTGGCCGGCGAGAAGAAAGCCAAGACAGC
ACGATTCGTCAAAACCCACGGTGCTGACCGTGCCCTTGACCAAGCCAGCCTCGCCCGCGCCCAATCACTGGTCGGCCTCAAGGGCTACGTGACCAACATC
CCGGTCACTGTCATGCCAGCCGCCGAGGTCATCGCGAAATACCACGACCTGTGGCACGTGGAGAAATCGTTTCGGATGTCCAAATCCGACCTCGATGCCC
GGCCTATGTTCAACCGGATCCGCGATGCCATCGAGGCCCACCTGACCATCGTGTTCGCCGCCCTGGCCGTCTCTCATACCATCCAGTCGCGCACCGGACT
GTCCATCGCCAAGGTCATCAAGCTCCTGCGTCCCCTGCGCTCGGCGACCATCACCATCAACGGCGCCACCCAAACCTTCCCCCCGGCAATCCCCGACACC
GAGAGACAGATCCTCACCAACCTCGGCTTCAACCCTGGGTACTAAGCGAAATGTCCAAACTCAGG
TCGTGCGGTGGCGTACGTGCGGAAAGTGCGCACTGCCTCGGGCGCGGTGGCGGTGCAGGTCGCCCGCAAAGACGCGGGCAAGGTGGTGATCCTGGCCCAT
CTCGGATCAGCTCATACCGATGCTGAGCTGGGCATTCTGCTCGAGCAAGCGAAGGCGATGGTCATCGGCGGCCAGGTCGCACTGGATTTCGAGGTGGCCG
CTCGGGCTCAATCGATGGCCGATGTCGCTGATTTCCGTGAACAGCGGGTGCTCGGCGAAAAGTCTGGGCCCTCGGCTGCAGCGCCGGTGGTGCCGCCAGG
GCGCACGGTCGGGGCCAGCTCGCGGCTGCTCTATGACCTACTCGGCCACGTCTATGACTGGCATGGTTTCGATACCGTCGGCGACGCAGTGTTCCGCGAT
CTGGTAATCGCCCGGATCGTGGAGCCGACCAGCAAGCTCGACGCGTCGCGGGTGTTGGCTGATCTGGGCGCCCAGCTGGTGTCCTACAAAACCATCGACC
GCCATGTCCGCACGATCCACGCCCGCGGGCACCGCGACGTGATCGCCGAGAAATGCTTCGCCTACGCCACCGACTGCGGCGGGCTGTCACTGATCTTGTA
TGACGTGACCACCCTGTATTTCGCCGCCGAATCCGAGGATTCGCTGCGCAAGGTTGGCTACTCCAAGGAACGTCGGGTCGATCCTCAAATTGTTGTCGGC
CTGTTGGTGGACCGCACCGGATTCCCGTTGGAGATCGGCTGTTTCGAAGGCAACACCGCCGAGACCACCACCATCGTGCCAATCATCACCAGCTTCCTGG
AACGTCACAACCTGGTCGGCACGCCGATGGTCGTGGCTGCCGATGCCGGCATGCTGTCCCAAACCAACCTGACCGCCCTCGATGAGCAGGAGTTGTCGTT
CATCGTGGGCTCTCGGATGACGAAGGCTCCCGGGGATCTGGAATCCCACTTCCATTGGAACGGTGACGTTTTCACCGACGGACAGATCATCGACACCGTC
ACGCCCCGACACGGCAACACCCGCGTCAACGACATCAAGAAGCGTGCCGAACCGGTCTGGGATCCCGAACGCGACACCGGGGCGTGGCGGGCCATCTGGT
CGTACTCGGCCAAACGCGCCCGCCGTGATCAAAAGACCCTGGCCGCTCAAGAAGCCCGGGCCCGGGCCATCGTGGCCGGCGAGAAGAAAGCCAAGACAGC
ACGATTCGTCAAAACCCACGGTGCTGACCGTGCCCTTGACCAAGCCAGCCTCGCCCGCGCCCAATCACTGGTCGGCCTCAAGGGCTACGTGACCAACATC
CCGGTCACTGTCATGCCAGCCGCCGAGGTCATCGCGAAATACCACGACCTGTGGCACGTGGAGAAATCGTTTCGGATGTCCAAATCCGACCTCGATGCCC
GGCCTATGTTCAACCGGATCCGCGATGCCATCGAGGCCCACCTGACCATCGTGTTCGCCGCCCTGGCCGTCTCTCATACCATCCAGTCGCGCACCGGACT
GTCCATCGCCAAGGTCATCAAGCTCCTGCGTCCCCTGCGCTCGGCGACCATCACCATCAACGGCGCCACCCAAACCTTCCCCCCGGCAATCCCCGACACC
GAGAGACAGATCCTCACCAACCTCGGCTTCAACCCTGGGTACTAAGCGAAATGTCCAAACTCAGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1638 bp | 545 aa | 108 | 1745 | + | No |
Chemistry : DDE
ORF sequence :
MAYVRKVRTASGAVAVQVARKDAGKVVILAHLGSAHTDAELGILLEQAKAMVIGGQVALDFEVAARAQSMADVADFREQRVLGEKSGPSAAAPVVPPGRT
VGASSRLLYDLLGHVYDWHGFDTVGDAVFRDLVIARIVEPTSKLDASRVLADLGAQLVSYKTIDRHVRTIHARGHRDVIAEKCFAYATDCGGLSLILYDV
TTLYFAAESEDSLRKVGYSKERRVDPQIVVGLLVDRTGFPLEIGCFEGNTAETTTIVPIITSFLERHNLVGTPMVVAADAGMLSQTNLTALDEQELSFIV
GSRMTKAPGDLESHFHWNGDVFTDGQIIDTVTPRHGNTRVNDIKKRAEPVWDPERDTGAWRAIWSYSAKRARRDQKTLAAQEARARAIVAGEKKAKTARF
VKTHGADRALDQASLARAQSLVGLKGYVTNIPVTVMPAAEVIAKYHDLWHVEKSFRMSKSDLDARPMFNRIRDAIEAHLTIVFAALAVSHTIQSRTGLSI
AKVIKLLRPLRSATITINGATQTFPPAIPDTERQILTNLGFNPGY
VGASSRLLYDLLGHVYDWHGFDTVGDAVFRDLVIARIVEPTSKLDASRVLADLGAQLVSYKTIDRHVRTIHARGHRDVIAEKCFAYATDCGGLSLILYDV
TTLYFAAESEDSLRKVGYSKERRVDPQIVVGLLVDRTGFPLEIGCFEGNTAETTTIVPIITSFLERHNLVGTPMVVAADAGMLSQTNLTALDEQELSFIV
GSRMTKAPGDLESHFHWNGDVFTDGQIIDTVTPRHGNTRVNDIKKRAEPVWDPERDTGAWRAIWSYSAKRARRDQKTLAAQEARARAIVAGEKKAKTARF
VKTHGADRALDQASLARAQSLVGLKGYVTNIPVTVMPAAEVIAKYHDLWHVEKSFRMSKSDLDARPMFNRIRDAIEAHLTIVFAALAVSHTIQSRTGLSI
AKVIKLLRPLRSATITINGATQTFPPAIPDTERQILTNLGFNPGY
Blast result :
Comments
ISMsm6 is 43% aa similar to ISMhp1.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006)Direct Submission GenBank.