ISMsm5
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1103 bp
Ends
IR Length : 32/38
IRL : GTGTCGCGCGTCATTAATTAGTTTACAGTGTGGGATGATGGTGTATGCCG
IRR : GTGTCGCGCGTCTGAAGTTTGTTTACGAGTGTGGGGCAGGATTTCGTCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGCTGCAGC | TA | GGCGGCATCT | 2 |
CAAGCCGATC | TA | GAAGCTCCCG | 2 |
CAAGCGCAGC | TA | GCGTTCTGCG | 2 |
CCCGAGCGCC | TA | GATGGGCTAA | 2 |
CGGCGGGCGC | TA | GCTTGACCTG | 2 |
DNA sequence
GTGTCGCGCGTCATTAATTAGTTTACAGTGTGGGATGATGGTGTATGCCGTCATCCACATTGGTGATCAGTTCTGAAGATCGTGTGACGTTGGAGTCGTG
GACGCGGTCCTCGACGGTGCCTGCCGGCCGTGTTGAGCGGGCGCGGATCGTGCTGGCGGTGGCCGACGGTGCGGGGACCTCGGGTGCGGCGCGGCAGGTG
GGGGTGTCGCGGCCGACGGTGATCAAGTGGCGGGATCGGTTCGCCGCGTTCGGCATTGAGGGGCTTGATGACGAACCACGCAGCGGCCGACCCAAGACGG
TCGATGACGCCGAGATCCTGGCGACCACGCTCGAGCCGCCACCGGAATCGTTGGCCGTGACCCACTGGTCGAGTCGACTGCTCGGAAAGCACCTCGGGAT
CGGGGATGCCACGGTGGCCCGGGCGTGGCGACGCTACGGGGTCAAACCGTGGCGGCGCGAGACGTTCAAGTTCTCCACCGACCCTGAACTGGAGGCCAAG
GTCCGTGACGTGATCGGCCTGTATCTGAACCCACCAGAAAAGGCGGTCGTGTTGTGCGTGGACGAAAAGAGCCAGATTCAGGCACTCAACCGCACCCAGC
CGATTTTGCCGTTGCGTCCGGGACTGCCGGAGAAGGCGACCCACGACTATCAGCGCAACGGCACCGCCACGTTGTTCGCCGCCTTGGAAATCGCAACCGG
CAAAGTGACCGACCGCTGCTACGAGCGGCACGGCAAAGCCGAGTTCCTCGATTTCCTCAAGACGGTCGCCCGGGCCTACCCGCGCCGCAAACTGCATGTG
GTGTGCGACAACTACCACACCCACAAACACGCTGACATCAATGCGTGGTTGGTCAAGAATCCCCGCGTGACACTGCATTTCACCCCGACCTCAGGCTCCT
GGTTGAACCTGGTCGAGGTGTTCTTCTCGATCATCACCCGCCAAGCAATCCGCCGGGGCTCGTTCAACAGCGTTAAAGAACTCATCGCTGCCATCAGCGC
CTTCATCGAGGGCCGGAACCAACGCGCCCACCCATTCGTGTGGACCAAGACCGCCGACGAAATCCTGCCCCACACTCGTAAACAAACTTCAGACGCGCGA
CAC
GACGCGGTCCTCGACGGTGCCTGCCGGCCGTGTTGAGCGGGCGCGGATCGTGCTGGCGGTGGCCGACGGTGCGGGGACCTCGGGTGCGGCGCGGCAGGTG
GGGGTGTCGCGGCCGACGGTGATCAAGTGGCGGGATCGGTTCGCCGCGTTCGGCATTGAGGGGCTTGATGACGAACCACGCAGCGGCCGACCCAAGACGG
TCGATGACGCCGAGATCCTGGCGACCACGCTCGAGCCGCCACCGGAATCGTTGGCCGTGACCCACTGGTCGAGTCGACTGCTCGGAAAGCACCTCGGGAT
CGGGGATGCCACGGTGGCCCGGGCGTGGCGACGCTACGGGGTCAAACCGTGGCGGCGCGAGACGTTCAAGTTCTCCACCGACCCTGAACTGGAGGCCAAG
GTCCGTGACGTGATCGGCCTGTATCTGAACCCACCAGAAAAGGCGGTCGTGTTGTGCGTGGACGAAAAGAGCCAGATTCAGGCACTCAACCGCACCCAGC
CGATTTTGCCGTTGCGTCCGGGACTGCCGGAGAAGGCGACCCACGACTATCAGCGCAACGGCACCGCCACGTTGTTCGCCGCCTTGGAAATCGCAACCGG
CAAAGTGACCGACCGCTGCTACGAGCGGCACGGCAAAGCCGAGTTCCTCGATTTCCTCAAGACGGTCGCCCGGGCCTACCCGCGCCGCAAACTGCATGTG
GTGTGCGACAACTACCACACCCACAAACACGCTGACATCAATGCGTGGTTGGTCAAGAATCCCCGCGTGACACTGCATTTCACCCCGACCTCAGGCTCCT
GGTTGAACCTGGTCGAGGTGTTCTTCTCGATCATCACCCGCCAAGCAATCCGCCGGGGCTCGTTCAACAGCGTTAAAGAACTCATCGCTGCCATCAGCGC
CTTCATCGAGGGCCGGAACCAACGCGCCCACCCATTCGTGTGGACCAAGACCGCCGACGAAATCCTGCCCCACACTCGTAAACAAACTTCAGACGCGCGA
CAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 353 aa | 45 | 1103 | + | No |
Chemistry : DDE
ORF sequence :
MPSSTLVISSEDRVTLESWTRSSTVPAGRVERARIVLAVADGAGTSGAARQVGVSRPTVIKWRDRFAAFGIEGLDDEPRSGRPKTVDDAEILATTLEPPP
ESLAVTHWSSRLLGKHLGIGDATVARAWRRYGVKPWRRETFKFSTDPELEAKVRDVIGLYLNPPEKAVVLCVDEKSQIQALNRTQPILPLRPGLPEKATH
DYQRNGTATLFAALEIATGKVTDRCYERHGKAEFLDFLKTVARAYPRRKLHVVCDNYHTHKHADINAWLVKNPRVTLHFTPTSGSWLNLVEVFFSIITRQ
AIRRGSFNSVKELIAAISAFIEGRNQRAHPFVWTKTADEILPHTRKQTSDARH
ESLAVTHWSSRLLGKHLGIGDATVARAWRRYGVKPWRRETFKFSTDPELEAKVRDVIGLYLNPPEKAVVLCVDEKSQIQALNRTQPILPLRPGLPEKATH
DYQRNGTATLFAALEIATGKVTDRCYERHGKAEFLDFLKTVARAYPRRKLHVVCDNYHTHKHADINAWLVKNPRVTLHFTPTSGSWLNLVEVFFSIITRQ
AIRRGSFNSVKELIAAISAFIEGRNQRAHPFVWTKTADEILPHTRKQTSDARH
Blast result :
Comments
ISMsm5 is 62% aa similar to ISRso5.
References
1]Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct Submission GenBank.