ISMsm3
- Family IS1380
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1695 bp
Ends
IR Length : 15/18
IRL : CCCAGATTTTTCGCGGATTATCTCTGGTGAGGGCGTGTAGATAAGCGAAA
IRR : CCCGGATTTTTCGTCGATGGTGATGGCGGTGGATTTGTAGGGCGTGATGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGCACTCCCG | CTAA | CTCGCGCTAG | 4 |
CTTCGCAGAC | CTAG | GAGTGGACGA | 4 |
DNA sequence
CCCAGATTTTTCGCGGATTATCTCTGGTGAGGGCGTGTAGATAAGCGAAAGTGCCTGTCCTGCAAGGGATAATTGGACTTCTCTAGGGTTCAACCATCCT
GACGGGAAGGCACTTCGCAGGTGAAGAGTATCGCGGCCGCATCGCGGGTGAAAGTGTCAGCCGACGGCCACGGGGTCGTGTCGCACGCCGGGATGGGCCT
ACTGCGGGAACTGGCCGACCGGACCGGCCTATCAGCGCAGGTCACCGGCGCTTTGGCCGACACCTACCGCGGGCCGTGGACCTACGCACCCGGCGAGGTG
TTCGCCGATCTGGCCGCGGCGGTCGCCGACGGCGCGGACTGCATTGACGGGGTCGGCCAACTGTGCGGCGACCGTGAGCACGCGTTCGGCGCGAAAGCCT
CCACGACCACGATGTGGCGGCTGGTCGATGAGCGCATCGACGCCGCACACCTGCCTGCGGTGCGCGCGGCCCGCGCCAGCGCGCGGGCGGCGGCCTGGGC
CGCCGGTGCGGCCCCCGAACCGGGTGGCTGGCTGCACATCGACATCGACGCCACCGTGGTGATCGATCACTCCGACAACAAACACGGCGCGACGCCGACC
TGGAAGAAAACGTTCGGACACCATCCGCTGCTGGCGTTCCTGGACCGCCCCGAGATCGCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCAGCGGCAACG
CGGGCTCCAACACCGCCAGCGACCACATCATCGTCCTGGCCCAGGCGCTGGCAGCGCTGCCCGCGCCGTGGCGGCCCGACTCGAGTCGTGGCGGTGATCC
CGACCGGCCCCAGGTGCTGGTGCGTTGCGACACCGCCGGAGCCACCCACCGATTCGCCGACGCCTGCCGCGAGCAGGGAGTCGGATTCTCCTTCGGCTAC
CCCGTCGACGCCCGCGTCCAGGACGCCGCCGACACCCTCAACCTTGCCGAGGGCTGGTACCCGGCCATCGACACCGACGGCGGCATCCGTGACGGCGCCT
GGGTCGCCGAGGCCACCACCTTGGTCAACCTCAACAGCTGGCCGCCGGGCACCCGGCTGATCCTGCGCAAGGAGAGACCGCATCCCGGCGCCCAGCTGCG
GTTCACCGACACCGACGGAATGCGCGTCACCGCGTTCATCACCGACACACCCACCGGTGTCGTGGCCGGCCAAGTCGCCGGCCTGGAGTTGCGGCACCGC
CAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAGAACACCGGCCTACGCAACCTGCCGTGTCACGGCTTCTGGGCCAACGCCGCCTGGCTCGAGA
TCGTCCTGGCCGCCACCGACCTGGTCACCTGGGCACGGCTCATCGGATTCACCAGTGATCCGACGCTGGCCCGCGCCGAGATCGCCACGTTCCGCTACCG
CGTGCTGCACGTCGCAGCCCGCATCACCCGCGGCGCCCGCCAACTCCGGCTGCGCATCGACGCCACCTGGCGCTGGGCATCGGCGATCGCCACCGCCTGG
CAACACCTGCGCACCGCCTTCGGATAACAGCCGGCCTCCCGACCGATCGATCACGAAAGACCTACCGGCCATGGGAAAGCCCGCCCCACCCGGCGACACG
GGACCACCCCAGCATGCCTTGTGACCGCAGACGTCACCCGACCAACCATCACGCCCTACAAATCCACCGCCATCACCATCGACGAAAAATCCGGG
GACGGGAAGGCACTTCGCAGGTGAAGAGTATCGCGGCCGCATCGCGGGTGAAAGTGTCAGCCGACGGCCACGGGGTCGTGTCGCACGCCGGGATGGGCCT
ACTGCGGGAACTGGCCGACCGGACCGGCCTATCAGCGCAGGTCACCGGCGCTTTGGCCGACACCTACCGCGGGCCGTGGACCTACGCACCCGGCGAGGTG
TTCGCCGATCTGGCCGCGGCGGTCGCCGACGGCGCGGACTGCATTGACGGGGTCGGCCAACTGTGCGGCGACCGTGAGCACGCGTTCGGCGCGAAAGCCT
CCACGACCACGATGTGGCGGCTGGTCGATGAGCGCATCGACGCCGCACACCTGCCTGCGGTGCGCGCGGCCCGCGCCAGCGCGCGGGCGGCGGCCTGGGC
CGCCGGTGCGGCCCCCGAACCGGGTGGCTGGCTGCACATCGACATCGACGCCACCGTGGTGATCGATCACTCCGACAACAAACACGGCGCGACGCCGACC
TGGAAGAAAACGTTCGGACACCATCCGCTGCTGGCGTTCCTGGACCGCCCCGAGATCGCCGGCGGGGAAGCCCTGGCCGGGCTGCTGCGCAGCGGCAACG
CGGGCTCCAACACCGCCAGCGACCACATCATCGTCCTGGCCCAGGCGCTGGCAGCGCTGCCCGCGCCGTGGCGGCCCGACTCGAGTCGTGGCGGTGATCC
CGACCGGCCCCAGGTGCTGGTGCGTTGCGACACCGCCGGAGCCACCCACCGATTCGCCGACGCCTGCCGCGAGCAGGGAGTCGGATTCTCCTTCGGCTAC
CCCGTCGACGCCCGCGTCCAGGACGCCGCCGACACCCTCAACCTTGCCGAGGGCTGGTACCCGGCCATCGACACCGACGGCGGCATCCGTGACGGCGCCT
GGGTCGCCGAGGCCACCACCTTGGTCAACCTCAACAGCTGGCCGCCGGGCACCCGGCTGATCCTGCGCAAGGAGAGACCGCATCCCGGCGCCCAGCTGCG
GTTCACCGACACCGACGGAATGCGCGTCACCGCGTTCATCACCGACACACCCACCGGTGTCGTGGCCGGCCAAGTCGCCGGCCTGGAGTTGCGGCACCGC
CAGCACGCCCGCGTCGAGGACCGCATCCGCGAACTCAAGAACACCGGCCTACGCAACCTGCCGTGTCACGGCTTCTGGGCCAACGCCGCCTGGCTCGAGA
TCGTCCTGGCCGCCACCGACCTGGTCACCTGGGCACGGCTCATCGGATTCACCAGTGATCCGACGCTGGCCCGCGCCGAGATCGCCACGTTCCGCTACCG
CGTGCTGCACGTCGCAGCCCGCATCACCCGCGGCGCCCGCCAACTCCGGCTGCGCATCGACGCCACCTGGCGCTGGGCATCGGCGATCGCCACCGCCTGG
CAACACCTGCGCACCGCCTTCGGATAACAGCCGGCCTCCCGACCGATCGATCACGAAAGACCTACCGGCCATGGGAAAGCCCGCCCCACCCGGCGACACG
GGACCACCCCAGCATGCCTTGTGACCGCAGACGTCACCCGACCAACCATCACGCCCTACAAATCCACCGCCATCACCATCGACGAAAAATCCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1407 bp | 468 aa | 121 | 1527 | + | No |
Chemistry : DDE
ORF sequence :
MKSIAAASRVKVSADGHGVVSHAGMGLLRELADRTGLSAQVTGALADTYRGPWTYAPGEVFADLAAAVADGADCIDGVGQLCGDREHAFGAKASTTTMWR
LVDERIDAAHLPAVRAARASARAAAWAAGAAPEPGGWLHIDIDATVVIDHSDNKHGATPTWKKTFGHHPLLAFLDRPEIAGGEALAGLLRSGNAGSNTAS
DHIIVLAQALAALPAPWRPDSSRGGDPDRPQVLVRCDTAGATHRFADACREQGVGFSFGYPVDARVQDAADTLNLAEGWYPAIDTDGGIRDGAWVAEATT
LVNLNSWPPGTRLILRKERPHPGAQLRFTDTDGMRVTAFITDTPTGVVAGQVAGLELRHRQHARVEDRIRELKNTGLRNLPCHGFWANAAWLEIVLAATD
LVTWARLIGFTSDPTLARAEIATFRYRVLHVAARITRGARQLRLRIDATWRWASAIATAWQHLRTAFG
LVDERIDAAHLPAVRAARASARAAAWAAGAAPEPGGWLHIDIDATVVIDHSDNKHGATPTWKKTFGHHPLLAFLDRPEIAGGEALAGLLRSGNAGSNTAS
DHIIVLAQALAALPAPWRPDSSRGGDPDRPQVLVRCDTAGATHRFADACREQGVGFSFGYPVDARVQDAADTLNLAEGWYPAIDTDGGIRDGAWVAEATT
LVNLNSWPPGTRLILRKERPHPGAQLRFTDTDGMRVTAFITDTPTGVVAGQVAGLELRHRQHARVEDRIRELKNTGLRNLPCHGFWANAAWLEIVLAATD
LVTWARLIGFTSDPTLARAEIATFRYRVLHVAARITRGARQLRLRIDATWRWASAIATAWQHLRTAFG
Blast result :
Comments
ISMsm3 is 87% aa similar to ISMyma2.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct Submission GenBank.