ISMsm2
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1126 bp
Ends
IR Length : 28/33
IRL : GTGTCCTGAGTCATTAATTGCGGCCTAGTTGTTAAACTAGGTCGTGCCGA
IRR : GTGTCCTGAGTCATTAATTCGGGCGCAGTAGTTGGCGATGCTGGCCAGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCGAACGCGTC | TA | GCGGCCCGAGA | 2 |
CTGCGCTGAAC | TA | GCTCCGCTCGC | 2 |
GCGAGAGCGAC | TA | GCGGTCGCTCG | 2 |
TGCCGCGGGTC | TA | GGCCCGGCGGG | 2 |
DNA sequence
GTGTCCTGAGTCATTAATTGCGGCCTAGTTGTTAAACTAGGTCGTGCCGACTCCTCATGCCGCTGAGATTGTGTTGTCCGCTGATGAGCGGGCCGAGTTG
GAGGGCTGGGCGCGGCGACGTACGAGTGCTGCCGGCCTGGCCATGCGGGCTCGAATTGTGTTGGCAGCTGCCGATGGTGGGTCCAATACTGAACTGGCCG
ATCGCCTGGAGTTGTCGATCGGCACGGTGCGGCGCTGGCGCAATCGGTTCGCTGAGCTGCGACTGGACGGCCTCGTTGATGAACCACGTCCGGGTCGGCC
GCGGGTTGTCGGTGACGAGCAGATCGAAGCGTTGATCACCGCGACGTTGGAGACCACCCCGCCTGATGCCACCCATTGGTCAACCCGCTCGATGGCTGCC
CATCTGGGGTTGAGTCAGTCGATGGTCTCGCGCGTCTGGCGAGCGTTCGGACTGGCTCCCCACAAGCAGGACTCGTGGAAACTGTCGAAAGACCCGCTGT
TTGTGGCCAAGGTCCGCGATGTCGTCGGGCTGTACCTGAACCCACCGGAACGGGCCTTGGTGCTGTGCGTGGACGAGAAAACCCAGATCCAGGCACTGAA
CCGGACCCAACCGGTGTTCCCGATGTTGCCCGGCACCCCGGCGCGGGCCAGCCATGACTACGTTCGCCACGGCACCTCCAGCCTCTACGCCGCTCTCGAC
CTGACCACCGGCAAGGTGATCGGCGCCCTGCACTCTCGCCACCGAGCCACGGAGTTTCTGGCTTTTCTCAAGAAGATCGACGTCGAGGTCCCCGACGATC
TTGATGTGCACTTGGTTCTCGACAACGCCTCCACGCACAAGACCCCTGCGGTAAAACGTTGGCTGACAGGCCATCCCAGATTTGTCCTGCACTTCACCCC
GACCAGCTCGTCCTGGCTCAATCTCGTGGAACGCTGGTTCGCCGAGCTGACCACCAAGAAGCTGCGACGCTCCACCCACACCTCAGTTCGGCAACTCAAC
GCCGACATCCGAGCGTGGATCGACACCTGGAACGACAACCCCAAGCCCTACGTCTGGACCAAGACCGCCGATCAAATCCTGGCCAGCATCGCCAACTACT
GCGCCCGAATTAATGACTCAGGACAC
GAGGGCTGGGCGCGGCGACGTACGAGTGCTGCCGGCCTGGCCATGCGGGCTCGAATTGTGTTGGCAGCTGCCGATGGTGGGTCCAATACTGAACTGGCCG
ATCGCCTGGAGTTGTCGATCGGCACGGTGCGGCGCTGGCGCAATCGGTTCGCTGAGCTGCGACTGGACGGCCTCGTTGATGAACCACGTCCGGGTCGGCC
GCGGGTTGTCGGTGACGAGCAGATCGAAGCGTTGATCACCGCGACGTTGGAGACCACCCCGCCTGATGCCACCCATTGGTCAACCCGCTCGATGGCTGCC
CATCTGGGGTTGAGTCAGTCGATGGTCTCGCGCGTCTGGCGAGCGTTCGGACTGGCTCCCCACAAGCAGGACTCGTGGAAACTGTCGAAAGACCCGCTGT
TTGTGGCCAAGGTCCGCGATGTCGTCGGGCTGTACCTGAACCCACCGGAACGGGCCTTGGTGCTGTGCGTGGACGAGAAAACCCAGATCCAGGCACTGAA
CCGGACCCAACCGGTGTTCCCGATGTTGCCCGGCACCCCGGCGCGGGCCAGCCATGACTACGTTCGCCACGGCACCTCCAGCCTCTACGCCGCTCTCGAC
CTGACCACCGGCAAGGTGATCGGCGCCCTGCACTCTCGCCACCGAGCCACGGAGTTTCTGGCTTTTCTCAAGAAGATCGACGTCGAGGTCCCCGACGATC
TTGATGTGCACTTGGTTCTCGACAACGCCTCCACGCACAAGACCCCTGCGGTAAAACGTTGGCTGACAGGCCATCCCAGATTTGTCCTGCACTTCACCCC
GACCAGCTCGTCCTGGCTCAATCTCGTGGAACGCTGGTTCGCCGAGCTGACCACCAAGAAGCTGCGACGCTCCACCCACACCTCAGTTCGGCAACTCAAC
GCCGACATCCGAGCGTGGATCGACACCTGGAACGACAACCCCAAGCCCTACGTCTGGACCAAGACCGCCGATCAAATCCTGGCCAGCATCGCCAACTACT
GCGCCCGAATTAATGACTCAGGACAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1086 bp | 361 aa | 44 | 1129 | + | No |
Chemistry : DDE
ORF sequence :
MPTPHAAEIVLSADERAELEGWARRRTSAAGLAMRARIVLAAADGGSNTELADRLELSIGTVRRWRNRFAELRLDGLVDEPRPGRPRVVGDEQIEALITA
TLETTPPDATHWSTRSMAAHLGLSQSMVSRVWRAFGLAPHKQDSWKLSKDPLFVAKVRDVVGLYLNPPERALVLCVDEKTQIQALNRTQPVFPMLPGTPA
RASHDYVRHGTSSLYAALDLTTGKVIGALHSRHRATEFLAFLKKIDVEVPDDLDVHLVLDNASTHKTPAVKRWLTGHPRFVLHFTPTSSSWLNLVERWFA
ELTTKKLRRSTHTSVRQLNADIRAWIDTWNDNPKPYVWTKTADQILASIANYCARINDSGH
TLETTPPDATHWSTRSMAAHLGLSQSMVSRVWRAFGLAPHKQDSWKLSKDPLFVAKVRDVVGLYLNPPERALVLCVDEKTQIQALNRTQPVFPMLPGTPA
RASHDYVRHGTSSLYAALDLTTGKVIGALHSRHRATEFLAFLKKIDVEVPDDLDVHLVLDNASTHKTPAVKRWLTGHPRFVLHFTPTSSSWLNLVERWFA
ELTTKKLRRSTHTSVRQLNADIRAWIDTWNDNPKPYVWTKTADQILASIANYCARINDSGH
Blast result :
Comments
ISMsm2 is 71% aa similar to ISPsy1.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct Submission GenBank.