ISTesp2
- Family ISL3
- Group
Isoform Synonym(s) ISMlu4
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB084235 | ND | Terrabacter sp. | Terrabacter sp. DBF63 Micrococcus luteus NCTC 2665 |
DNA section
IS Length : 1397 bp
Ends
IR Length : 25/30
IRL : GGCTCTCCTGACGCTTCCGTGGGTGTTTTCGCGCGCCGTTGACGAGGGCA
IRR : GGCTCTCCTGACTGATCCGTGGGTCATTTCCGGCCTGGGAGGACGGGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGGTATTGA | CTATTACAAGCTG | 0 | |
AGCTTGACGAC | ACTTTTTT | GTCGTCTGAT | 8 |
DNA sequence
GGCTCTCCTGACGCTTCCGTGGGTGTTTTCGCGCGCCGTTGACGAGGGCACGCCGCTCTCTGCCTAGGTTTCTGGCTGTCGAGGTCAGTTACCTGAAGAG
CGGAGAACGGCGTGCGGAACGCAAGCCTATGGCGGTCCTTGCTGGGCGTCGAGAAGACGGTCGTGGAGGACATCGAGTTCGATGAGGACGACCAGCTGCT
GGTGGCTCATGTCCGTCCCCGGGCTCGGGTGCGTGGCCGGTGCGGACGGTGCGGGCGCAGGTCGCCCGGGTACGACCGTGGCGAGGGTCGGCGGCGGTGG
CGGGCCCTGGATCTGGGCACGGTGCAGGTCTACCTCGAGGCCGACGCCCCGCGGGTGGCCTGCCGCCAGCACGGCCCCACGGTGGCCGCCGTCCCGTGGG
CCAGGCACGGGGCCGGCCACACCCTGGTCTTCGACGAGCAGGTGGCCTGGCTGGCCACGCAGTGCTCCAAGTCCGCGGTCACCGAGCTGATGCGCATCGC
CTGGCGCACCGTCGGGGCGATCATCACCCGGGTCTGGACCGACGTGGAGGCCCTCGGCGACCGGTTCGCCGGCCTGCGACGGATCGGCATCGATGAGATC
TCCTACAAGAAGGGCCACCGCTACCTCACGATCGTGGTCGACCACGACACCGGCCGGCTCGTCTGGGCCGCCCCGGGCCGGGACAAGCCCACCCTGGCGA
GGTTCTTCGAGGCCCTCGGGCCCGACCGGTGCGCCGCGATCACCCACGTCAGCGCCGACGGGGCGGACTGGATCGCCGCCGTGGTCGCCCAGCGGTGCCC
GAACGCGGTGCGCTGCGCCGATCCGTTCCACATCGTCAAGTGGGCCACCGACGCCCTGGACGAGGTCCGTCGCCAGGCGTGGAACGAAGCCCGCGGCGCC
GTCCGGCAGCGCCGGGCCGGGCGGGCCAGCGGGCACGCCAAGGCGCTCAAGCACGCCCGGTACGCGCTGTGGAAGAACCCCGAGAACCTCACCACCCGGC
AGCAGGCCAAGCTCGCCTGGGTCGCCAAGACCGACCCGCGCCTGCACCGGGCCTACCTGCTCAAGGAAGGACTGCGCCTGGTCTTCCAGCTACCCGCCGA
CGAGGCCGAGACGGCCCTGGAACGCTGGATCGGCTGGGCCCGACGCTGCCGCATCCCCGCCTTCGTCGAGCTCCAACGCCGCATCGTCAAGCACAAGGCC
TCGATCCTCGCCGCCATCGAGCACGGCCTGTCCAACGGACGCATCGAATCCGTGAACACCAAGATCCGACTCATCACCCGCGTCGCCTTCGGCTTCAAGT
CCCCCGAAGCCCTCATCGCCCTCGCCATGCTCAACCTCGGCGGCCACCGACCCGTCCTCCCAGGCCGGAAATGACCCACGGATCAGTCAGGAGAGCC
CGGAGAACGGCGTGCGGAACGCAAGCCTATGGCGGTCCTTGCTGGGCGTCGAGAAGACGGTCGTGGAGGACATCGAGTTCGATGAGGACGACCAGCTGCT
GGTGGCTCATGTCCGTCCCCGGGCTCGGGTGCGTGGCCGGTGCGGACGGTGCGGGCGCAGGTCGCCCGGGTACGACCGTGGCGAGGGTCGGCGGCGGTGG
CGGGCCCTGGATCTGGGCACGGTGCAGGTCTACCTCGAGGCCGACGCCCCGCGGGTGGCCTGCCGCCAGCACGGCCCCACGGTGGCCGCCGTCCCGTGGG
CCAGGCACGGGGCCGGCCACACCCTGGTCTTCGACGAGCAGGTGGCCTGGCTGGCCACGCAGTGCTCCAAGTCCGCGGTCACCGAGCTGATGCGCATCGC
CTGGCGCACCGTCGGGGCGATCATCACCCGGGTCTGGACCGACGTGGAGGCCCTCGGCGACCGGTTCGCCGGCCTGCGACGGATCGGCATCGATGAGATC
TCCTACAAGAAGGGCCACCGCTACCTCACGATCGTGGTCGACCACGACACCGGCCGGCTCGTCTGGGCCGCCCCGGGCCGGGACAAGCCCACCCTGGCGA
GGTTCTTCGAGGCCCTCGGGCCCGACCGGTGCGCCGCGATCACCCACGTCAGCGCCGACGGGGCGGACTGGATCGCCGCCGTGGTCGCCCAGCGGTGCCC
GAACGCGGTGCGCTGCGCCGATCCGTTCCACATCGTCAAGTGGGCCACCGACGCCCTGGACGAGGTCCGTCGCCAGGCGTGGAACGAAGCCCGCGGCGCC
GTCCGGCAGCGCCGGGCCGGGCGGGCCAGCGGGCACGCCAAGGCGCTCAAGCACGCCCGGTACGCGCTGTGGAAGAACCCCGAGAACCTCACCACCCGGC
AGCAGGCCAAGCTCGCCTGGGTCGCCAAGACCGACCCGCGCCTGCACCGGGCCTACCTGCTCAAGGAAGGACTGCGCCTGGTCTTCCAGCTACCCGCCGA
CGAGGCCGAGACGGCCCTGGAACGCTGGATCGGCTGGGCCCGACGCTGCCGCATCCCCGCCTTCGTCGAGCTCCAACGCCGCATCGTCAAGCACAAGGCC
TCGATCCTCGCCGCCATCGAGCACGGCCTGTCCAACGGACGCATCGAATCCGTGAACACCAAGATCCGACTCATCACCCGCGTCGCCTTCGGCTTCAAGT
CCCCCGAAGCCCTCATCGCCCTCGCCATGCTCAACCTCGGCGGCCACCGACCCGTCCTCCCAGGCCGGAAATGACCCACGGATCAGTCAGGAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1263 bp | 420 aa | 112 | 1374 | + | No |
Description :
ORF sequence :
MRNASLWRSLLGVEKTVVEDIEFDEDDQLLVAHVRPRARVRGRCGRCGRRSPGYDRGEGRRRWRALDLGTVQVYLEADAPRVACRQHGPTVAAVPWARHG
AGHTLVFDEQVAWLATQCSKSAVTELMRIAWRTVGAIITRVWTDVEALGDRFAGLRRIGIDEISYKKGHRYLTIVVDHDTGRLVWAAPGRDKPTLARFFE
ALGPDRCAAITHVSADGADWIAAVVAQRCPNAVRCADPFHIVKWATDALDEVRRQAWNEARGAVRQRRAGRASGHAKALKHARYALWKNPENLTTRQQAK
LAWVAKTDPRLHRAYLLKEGLRLVFQLPADEAETALERWIGWARRCRIPAFVELQRRIVKHKASILAAIEHGLSNGRIESVNTKIRLITRVAFGFKSPEA
LIALAMLNLGGHRPVLPGRK
AGHTLVFDEQVAWLATQCSKSAVTELMRIAWRTVGAIITRVWTDVEALGDRFAGLRRIGIDEISYKKGHRYLTIVVDHDTGRLVWAAPGRDKPTLARFFE
ALGPDRCAAITHVSADGADWIAAVVAQRCPNAVRCADPFHIVKWATDALDEVRRQAWNEARGAVRQRRAGRASGHAKALKHARYALWKNPENLTTRQQAK
LAWVAKTDPRLHRAYLLKEGLRLVFQLPADEAETALERWIGWARRCRIPAFVELQRRIVKHKASILAAIEHGLSNGRIESVNTKIRLITRVAFGFKSPEA
LIALAMLNLGGHRPVLPGRK
Blast result :
Comments
ISTesp2 is 47% aa similar to ISMbu4.
References
1] Habe,H., Miyakoshi,M., Chung,J., Kasuga,K., Yoshida,T., Nojiri,H. and Omori,T. (2003) Appl. Microbiol. Biotechnol. 61 (1), 44-54
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Lowry,S., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Young,M. and Greenblatt,C. (2009) Direct GenBank submission.