ISMmg5

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAAP01003713 ND Magnetospirillum magnetotacticum
Magnetospirillum magnetotacticum MS-1
DNA section
IS Length : 1101 bp

Ends


IR Length : 38/43

IRL : CGCGCCTATTCGCTTTACGCCCACACCCACTACATTTAGAGTGGGTGCAA
IRR : CGTGCCTATTCGCTTAACGCCCATACCCACTACATTTAGGATGTCGCCAC

Insertion site


Left flankDirect repeatRight flankDR Length
GACCACGAAGAACTCTTGATCATTCAACGTTCCAACCGACA8

DNA sequence

CGCGCCTATTCGCTTTACGCCCACACCCACTACATTTAGAGTGGGTGCAAAGCGAATAGGTGGTGGCCATGGACGTTCTCGTCCGAGCTGACCTCCCGTT
CCCGGAATCGCTTCCTGGGTTCCAGCGGCTTTTTCCTGACGATGCGGCTTGCGCCACGTACCTGGAGCGCTCCCGTTGGCCGGACGGTTTCGTCTGCCCC
CATTGCGGTGTTGTCGGATCACCGTTCCGCTTCGAAAACCGTCCCGGCATCCTGCGTTGTCGGGCCTGCCGCAAGAATACTGGCCTGACCGTTGGCACTG
TCATGGAGCGCAGCCATATTCCGCTCTCGACGTGGTTTTGGGCCGCCTATCTGGTGTCCAGCCAGACGCCCGGCTTGTCTGCCGTCCAATTCCAGCGCCA
GCTTGGACTGTCCCGCTATGAGACTGCGTTCGGCATTCTCCACAAGCTCCGCGCCGCCATGGTCCGTCCTGACCAAGACCGCATCGGCGGCCATCCCGAT
CAGCATGTTGAGGTGGATGAGACGTGGGTAGGTGGACGCACACGCGGCGAGGGCCGGGGCGGCCATCACAAGGTGCTGGTGGCCGCCGCCGTCGAGGTGC
GGCACCGGGAACCGGGAACCGCCCAAGACAATCGGCGCGACGGTCGCTACGCCGGTCGGGTGCGTCTGGCGATTGCCGCCGACCGTAGCGCCGAAGCGCT
GGGCGGTTTCGTCAAGAGTGCCGTCGAACTCGGCACGCTGGTCATCACCGATGATTGGAGCGGCTATGGCGGGCTGCGTAAGGACGGCTACGACCACCAT
GCAATTGCCCAATGCGGCGACCCAGAGGTGCCGGAGGAGTTCTTGCCCATCGTCCGTCTGGTCTTCTCAAACCTGAAATCGTGGATCAACGGCATTCATC
ACGGCGTCAGCGCCAAACACCTTCAGGCATACCTCAACGAGTTTACCTTCCGGTTCAATCGCCGCTTCTACCCGTTCAATGCCTTCCGGTCGCTCCTTGG
AATTGCCGGGGATGCGACAGCGCCAACCAAAACGGAGCTATATTCGGGAGAGTGGCGACATCCTAAATGTAGTGGGTATGGGCGTTAAGCGAATAGGCAC
G
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1020 bp339 aa691088+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVLVRADLPFPESLPGFQRLFPDDAACATYLERSRWPDGFVCPHCGVVGSPFRFENRPGILRCRACRKNTGLTVGTVMERSHIPLSTWFWAAYLVSSQT
PGLSAVQFQRQLGLSRYETAFGILHKLRAAMVRPDQDRIGGHPDQHVEVDETWVGGRTRGEGRGGHHKVLVAAAVEVRHREPGTAQDNRRDGRYAGRVRL
AIAADRSAEALGGFVKSAVELGTLVITDDWSGYGGLRKDGYDHHAIAQCGDPEVPEEFLPIVRLVFSNLKSWINGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDATAPTKTELYSGEWRHPKCSGYGR

 

Blast result :
Comments
ISMmg5 is 87% aa similar to ISApr3.
References
1] NCBI Microbial Genomes Annotation Project (2004) Direct submission GenBank.