ISMmg5
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAAP01003713 | ND | Magnetospirillum magnetotacticum | Magnetospirillum magnetotacticum MS-1 |
DNA section
IS Length : 1101 bp
Ends
IR Length : 38/43
IRL : CGCGCCTATTCGCTTTACGCCCACACCCACTACATTTAGAGTGGGTGCAA
IRR : CGTGCCTATTCGCTTAACGCCCATACCCACTACATTTAGGATGTCGCCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCACGAAGAACTCTT | GATCATTC | AACGTTCCAACCGACA | 8 |
DNA sequence
CGCGCCTATTCGCTTTACGCCCACACCCACTACATTTAGAGTGGGTGCAAAGCGAATAGGTGGTGGCCATGGACGTTCTCGTCCGAGCTGACCTCCCGTT
CCCGGAATCGCTTCCTGGGTTCCAGCGGCTTTTTCCTGACGATGCGGCTTGCGCCACGTACCTGGAGCGCTCCCGTTGGCCGGACGGTTTCGTCTGCCCC
CATTGCGGTGTTGTCGGATCACCGTTCCGCTTCGAAAACCGTCCCGGCATCCTGCGTTGTCGGGCCTGCCGCAAGAATACTGGCCTGACCGTTGGCACTG
TCATGGAGCGCAGCCATATTCCGCTCTCGACGTGGTTTTGGGCCGCCTATCTGGTGTCCAGCCAGACGCCCGGCTTGTCTGCCGTCCAATTCCAGCGCCA
GCTTGGACTGTCCCGCTATGAGACTGCGTTCGGCATTCTCCACAAGCTCCGCGCCGCCATGGTCCGTCCTGACCAAGACCGCATCGGCGGCCATCCCGAT
CAGCATGTTGAGGTGGATGAGACGTGGGTAGGTGGACGCACACGCGGCGAGGGCCGGGGCGGCCATCACAAGGTGCTGGTGGCCGCCGCCGTCGAGGTGC
GGCACCGGGAACCGGGAACCGCCCAAGACAATCGGCGCGACGGTCGCTACGCCGGTCGGGTGCGTCTGGCGATTGCCGCCGACCGTAGCGCCGAAGCGCT
GGGCGGTTTCGTCAAGAGTGCCGTCGAACTCGGCACGCTGGTCATCACCGATGATTGGAGCGGCTATGGCGGGCTGCGTAAGGACGGCTACGACCACCAT
GCAATTGCCCAATGCGGCGACCCAGAGGTGCCGGAGGAGTTCTTGCCCATCGTCCGTCTGGTCTTCTCAAACCTGAAATCGTGGATCAACGGCATTCATC
ACGGCGTCAGCGCCAAACACCTTCAGGCATACCTCAACGAGTTTACCTTCCGGTTCAATCGCCGCTTCTACCCGTTCAATGCCTTCCGGTCGCTCCTTGG
AATTGCCGGGGATGCGACAGCGCCAACCAAAACGGAGCTATATTCGGGAGAGTGGCGACATCCTAAATGTAGTGGGTATGGGCGTTAAGCGAATAGGCAC
G
CCCGGAATCGCTTCCTGGGTTCCAGCGGCTTTTTCCTGACGATGCGGCTTGCGCCACGTACCTGGAGCGCTCCCGTTGGCCGGACGGTTTCGTCTGCCCC
CATTGCGGTGTTGTCGGATCACCGTTCCGCTTCGAAAACCGTCCCGGCATCCTGCGTTGTCGGGCCTGCCGCAAGAATACTGGCCTGACCGTTGGCACTG
TCATGGAGCGCAGCCATATTCCGCTCTCGACGTGGTTTTGGGCCGCCTATCTGGTGTCCAGCCAGACGCCCGGCTTGTCTGCCGTCCAATTCCAGCGCCA
GCTTGGACTGTCCCGCTATGAGACTGCGTTCGGCATTCTCCACAAGCTCCGCGCCGCCATGGTCCGTCCTGACCAAGACCGCATCGGCGGCCATCCCGAT
CAGCATGTTGAGGTGGATGAGACGTGGGTAGGTGGACGCACACGCGGCGAGGGCCGGGGCGGCCATCACAAGGTGCTGGTGGCCGCCGCCGTCGAGGTGC
GGCACCGGGAACCGGGAACCGCCCAAGACAATCGGCGCGACGGTCGCTACGCCGGTCGGGTGCGTCTGGCGATTGCCGCCGACCGTAGCGCCGAAGCGCT
GGGCGGTTTCGTCAAGAGTGCCGTCGAACTCGGCACGCTGGTCATCACCGATGATTGGAGCGGCTATGGCGGGCTGCGTAAGGACGGCTACGACCACCAT
GCAATTGCCCAATGCGGCGACCCAGAGGTGCCGGAGGAGTTCTTGCCCATCGTCCGTCTGGTCTTCTCAAACCTGAAATCGTGGATCAACGGCATTCATC
ACGGCGTCAGCGCCAAACACCTTCAGGCATACCTCAACGAGTTTACCTTCCGGTTCAATCGCCGCTTCTACCCGTTCAATGCCTTCCGGTCGCTCCTTGG
AATTGCCGGGGATGCGACAGCGCCAACCAAAACGGAGCTATATTCGGGAGAGTGGCGACATCCTAAATGTAGTGGGTATGGGCGTTAAGCGAATAGGCAC
G
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1020 bp | 339 aa | 69 | 1088 | + | No |
Chemistry : DDE
ORF sequence :
MDVLVRADLPFPESLPGFQRLFPDDAACATYLERSRWPDGFVCPHCGVVGSPFRFENRPGILRCRACRKNTGLTVGTVMERSHIPLSTWFWAAYLVSSQT
PGLSAVQFQRQLGLSRYETAFGILHKLRAAMVRPDQDRIGGHPDQHVEVDETWVGGRTRGEGRGGHHKVLVAAAVEVRHREPGTAQDNRRDGRYAGRVRL
AIAADRSAEALGGFVKSAVELGTLVITDDWSGYGGLRKDGYDHHAIAQCGDPEVPEEFLPIVRLVFSNLKSWINGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDATAPTKTELYSGEWRHPKCSGYGR
PGLSAVQFQRQLGLSRYETAFGILHKLRAAMVRPDQDRIGGHPDQHVEVDETWVGGRTRGEGRGGHHKVLVAAAVEVRHREPGTAQDNRRDGRYAGRVRL
AIAADRSAEALGGFVKSAVELGTLVITDDWSGYGGLRKDGYDHHAIAQCGDPEVPEEFLPIVRLVFSNLKSWINGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNAFRSLLGIAGDATAPTKTELYSGEWRHPKCSGYGR
Blast result :
Comments
ISMmg5 is 87% aa similar to ISApr3.
References
1] NCBI Microbial Genomes Annotation Project (2004) Direct submission GenBank.