ISMrsp3
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXY01000005 | ND | Marinobacter sp. | Marinobacter sp. ELB17 |
DNA section
IS Length : 1049 bp
Ends
IR Length : 22
IRL : GGGGTATCCCTTTAGCTCCACAAATGGCAAAATCTCTCAATGGATGTGCC
IRR : GGGGTATCCCTTTAGCTCCACAGACTTCAATTTCCAGATTTTCCTCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGAATACT | GTATAAATAAAt | CAGTAATCGGTGAAAATC | 12 |
DNA sequence
GGGGTATCCCTTTAGCTCCACAAATGGCAAAATCTCTCAATGGATGTGCCAACAATTGCTCCGATAGGTGGAAAAGATTATCCAACGACCTGGGTTCAAT
TCCTTGATTGGTTCCACTCTGAACAAGCGTGCCGGGATTTTTTGGAACAGCTACGCTGGTCGGACGGACTGGTTTGCCCGAAGTGTGGGGTAATATCGCA
AGTTCATCGACGCAGTCGCGGCAGATTGATCTGTCCAGCATGCAGACATCAAGCAACGGTAACAGCGGGTACCATTTTTGATAAAACGCGCACAGAGCTT
CGCGTCTGGTTTGCCGCCATTTGGTACATCACCAACCAAAAGCATGGCGTCAGCGCATTGGGGTTGCAGCGTGTACTTGGCCTTGGCAGCTATGAGACAG
CGTGGACCATGCTGCACAGGCTGCGCCGAGCAATGGTACGCACAGACAGAGAGTTGCTCCATGGAGAGGTTGAGGTCGATGAAACCTATCTTGCACTCAC
CGACCGAGCCAACCCGATTAGTGCGGTGGGACGTAAAAGCAACACCACCAAGGTGTTGGTCGCCATAGCAGTGGAGATACTGCAACCCAAGGGATTTGGA
AGAATACGGATTCAACGGATTGAGCGTGGTGACAACGATAACCTGATGCCCTTCATCAAAGCCTTCATTCGTCCAGGATCGCTCATCCATAGCGATGGCT
CACCTGCTTACCGCCTGCTCACGGAGAGTGGATATGAGCACCGACAAACGGTTCATCTTGGTTCAGCCACTCCAGCCCATGAATCAATGCCAGGCGTTCA
CCGTGTGGCATCACTCTTGCAACGCTGGATGATGGGCACACACCATGGCGCAGTCCAGCCAGGACAGTTGGATAATTATCTTGATGAATATGTATTTCGG
TTTAATCGCCGTAAATCCAAATCAAGAGGCTTACTGTTTTATCGCTTGCTCCAGCAAGCAGTTGTGACAAAGCCGGTCACCTACCAAAAGGTGGTGGCAC
GGCGAGGAAAATCTGGAAATTGAAGTCTGTGGAGCTAAAGGGATACCCC
TCCTTGATTGGTTCCACTCTGAACAAGCGTGCCGGGATTTTTTGGAACAGCTACGCTGGTCGGACGGACTGGTTTGCCCGAAGTGTGGGGTAATATCGCA
AGTTCATCGACGCAGTCGCGGCAGATTGATCTGTCCAGCATGCAGACATCAAGCAACGGTAACAGCGGGTACCATTTTTGATAAAACGCGCACAGAGCTT
CGCGTCTGGTTTGCCGCCATTTGGTACATCACCAACCAAAAGCATGGCGTCAGCGCATTGGGGTTGCAGCGTGTACTTGGCCTTGGCAGCTATGAGACAG
CGTGGACCATGCTGCACAGGCTGCGCCGAGCAATGGTACGCACAGACAGAGAGTTGCTCCATGGAGAGGTTGAGGTCGATGAAACCTATCTTGCACTCAC
CGACCGAGCCAACCCGATTAGTGCGGTGGGACGTAAAAGCAACACCACCAAGGTGTTGGTCGCCATAGCAGTGGAGATACTGCAACCCAAGGGATTTGGA
AGAATACGGATTCAACGGATTGAGCGTGGTGACAACGATAACCTGATGCCCTTCATCAAAGCCTTCATTCGTCCAGGATCGCTCATCCATAGCGATGGCT
CACCTGCTTACCGCCTGCTCACGGAGAGTGGATATGAGCACCGACAAACGGTTCATCTTGGTTCAGCCACTCCAGCCCATGAATCAATGCCAGGCGTTCA
CCGTGTGGCATCACTCTTGCAACGCTGGATGATGGGCACACACCATGGCGCAGTCCAGCCAGGACAGTTGGATAATTATCTTGATGAATATGTATTTCGG
TTTAATCGCCGTAAATCCAAATCAAGAGGCTTACTGTTTTATCGCTTGCTCCAGCAAGCAGTTGTGACAAAGCCGGTCACCTACCAAAAGGTGGTGGCAC
GGCGAGGAAAATCTGGAAATTGAAGTCTGTGGAGCTAAAGGGATACCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
984 bp | 327 aa | 40 | 1023 | + | No |
Chemistry : DDE
ORF sequence :
MDVPTIAPIGGKDYPTTWVQFLDWFHSEQACRDFLEQLRWSDGLVCPKCGVISQVHRRSRGRLICPACRHQATVTAGTIFDKTRTELRVWFAAIWYITNQ
KHGVSALGLQRVLGLGSYETAWTMLHRLRRAMVRTDRELLHGEVEVDETYLALTDRANPISAVGRKSNTTKVLVAIAVEILQPKGFGRIRIQRIERGDND
NLMPFIKAFIRPGSLIHSDGSPAYRLLTESGYEHRQTVHLGSATPAHESMPGVHRVASLLQRWMMGTHHGAVQPGQLDNYLDEYVFRFNRRKSKSRGLLF
YRLLQQAVVTKPVTYQKVVARRGKSGN
KHGVSALGLQRVLGLGSYETAWTMLHRLRRAMVRTDRELLHGEVEVDETYLALTDRANPISAVGRKSNTTKVLVAIAVEILQPKGFGRIRIQRIERGDND
NLMPFIKAFIRPGSLIHSDGSPAYRLLTESGYEHRQTVHLGSATPAHESMPGVHRVASLLQRWMMGTHHGAVQPGQLDNYLDEYVFRFNRRKSKSRGLLF
YRLLQQAVVTKPVTYQKVVARRGKSGN
Blast result :
Comments
ISMrsp3 is 80% aa similar to ISAisp1.
References
1] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.