ISMtsp2
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABAY01000047 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 |
DNA section
IS Length : 894 bp
Ends
IR Length : 16/18
IRL : GGGCCTGTCGCAAACACGAACGGGCCCGCGTTCACGGGTCGTTAGCCATA
IRR : GGGCGTGTCGCAAACCCGGCTGTGAGGCGCAGAAGGGCGTCTACCGCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGGGCTGTCTGCTCCACCG | GCGCGGATCAGGCCGCTAC | 0 |
DNA sequence
GGGCCTGTCGCAAACACGAACGGGCCCGCGTTCACGGGTCGTTAGCCATAGCCGCCCAGCTTGCCGCCTCCGCCTCGGAGCCGGCCCATGATCCTCAACG
CCGTCGCCCTCAAGCTGAAGCGACAGGCCCGCGGCGACTTCCGGGGCCGGCACTTCGAAGCCACCCTGATCGTCCAAGCCGTCTCCTGGTCCCTGCGCTA
CGCCCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGCATGGAGGTGGATCACTCCACCATCAATCGCTGGGTGCTGTCCTACGCGCCCGCC
ATCGAACGGCGACTTCGCCGCTTCCGCAAGCCGCATTGCGGGACCGTGCGCGTGGACGAGACCTACATCAAGGTGCGGGGTCAGTGGCGCTACCTCTACC
GGGCCATCGACAAGCACGGGCAGGCGATCGACTTCCTGCTCACCGCCAATCGCGACCTGGAGGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCA
GCCACTGCTTGCCCCTGACCGCATCGGCACGGACGGCGCTGGCCCGTACCCGCCGGCGATCGCGGAGAGCCGCAAGGAGGGCCTGCTGCCACGGGCACCG
ACCCACCATGTCACCAAGCACCTGCAGCAGGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCGCGGGTGGGCGGCTTCCGTTCGTTCCACA
CGGCCCGCCGCACGATCTGCGGCTTTGAGGCGATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCGTGGACCGTGCGCGAGCAGAACCAGCTCCT
CGCCTGCTGCTTTGGTCTTCTCGTCGCGAACAAAGTGTGAAAGCGGGGCGGTAGACGCCCTTCTGCGCCTCACAGCCGGGTTTGCGACACGCCC
CCGTCGCCCTCAAGCTGAAGCGACAGGCCCGCGGCGACTTCCGGGGCCGGCACTTCGAAGCCACCCTGATCGTCCAAGCCGTCTCCTGGTCCCTGCGCTA
CGCCCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGCATGGAGGTGGATCACTCCACCATCAATCGCTGGGTGCTGTCCTACGCGCCCGCC
ATCGAACGGCGACTTCGCCGCTTCCGCAAGCCGCATTGCGGGACCGTGCGCGTGGACGAGACCTACATCAAGGTGCGGGGTCAGTGGCGCTACCTCTACC
GGGCCATCGACAAGCACGGGCAGGCGATCGACTTCCTGCTCACCGCCAATCGCGACCTGGAGGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCA
GCCACTGCTTGCCCCTGACCGCATCGGCACGGACGGCGCTGGCCCGTACCCGCCGGCGATCGCGGAGAGCCGCAAGGAGGGCCTGCTGCCACGGGCACCG
ACCCACCATGTCACCAAGCACCTGCAGCAGGGGATCGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCGCGGGTGGGCGGCTTCCGTTCGTTCCACA
CGGCCCGCCGCACGATCTGCGGCTTTGAGGCGATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCGTGGACCGTGCGCGAGCAGAACCAGCTCCT
CGCCTGCTGCTTTGGTCTTCTCGTCGCGAACAAAGTGTGAAAGCGGGGCGGTAGACGCCCTTCTGCGCCTCACAGCCGGGTTTGCGACACGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 88 | 840 | + | No |
Chemistry : DDE
ORF sequence :
MILNAVALKLKRQARGDFRGRHFEATLIVQAVSWSLRYALSYRDIEEMLLERGMEVDHSTINRWVLSYAPAIERRLRRFRKPHCGTVRVDETYIKVRGQW
RYLYRAIDKHGQAIDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPTHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNQLLACCFGLLVANKV
RYLYRAIDKHGQAIDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPTHHVTKHLQQGIESDHFRVKRPMPRVGGF
RSFHTARRTICGFEAMLWLRKGFGFAGAWTVREQNQLLACCFGLLVANKV
Blast result :
Comments
ISMtsp2 is 97% aa similar to ISMtsp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Marx,C.J. and Richardson,P. (2007) Direct submission GenBank.