ISMtsp1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABAY01000077 | ND | Methylobacterium sp. | Methylobacterium sp. 4-46 ctg483 |
DNA section
IS Length : 893 bp
Ends
IR Length : 15
IRL : GGGCCTGTCGCAAACGCGAACGGGCTCGCGTTCATGGGTCGTTAGCCATA
IRR : GGGCCTGTCGCAAACTGGGGTCCAGGCCGCAGAAGGGTCTCTGCCGTCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGTCGCCATGCTGTTACGCGTGATCCAG | GGGCGTAGCGCAGGTACCAGGAGACGGC | 0 |
DNA sequence
GGGCCTGTCGCAAACGCGAACGGGCTCGCGTTCATGGGTCGTTAGCCATACCCGCCCAGCTTGCCGCTCCGCCTCGGAGCCGGCCCATGATCCTGAACGC
CCTCGCCCTCAAGCTGAAGAGAGAGGCCCGCGGCGACTTCACGGGCCGGCACTTCGAAGCCACTCTCATCGTCCAGGCCGTCTCCTGGTACCTGCGCTAC
GCGCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGTATGGGGGTGGACCACTCCACCATCAACCGCTGGGTGCTGGCCTACGCGCCCGCCA
TCGAGCGGCGCCTGCGCCGGTTCCGCAAGCCGCATTGCGGGTCCGTGAGGGTGGACGAGACCTATATCAAGGTGCGTGGCCAGTGGCGCTATCTGTACCG
GGCCATCGACAAGCATGGCGAGGCGGTCGACTTCCTGCTCACCGCCAACCGCGACCTGGAAGCGGCCAAGCGCTTCTTCCGCAAGATGCTACAGGATCAG
CCGCTTCTCGCGCCCGACCGCATCGGCACCGATGGTGCTGGCCCTTACCCGCCGGCGATCGCCGAGAGCCGCAAGGAGGGCCTGCTGCCACGCGCGCCCA
TCCACCACGTCACCAAGCACTTGCAGCAAGGGATTGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCACGGGTCGGGGGCTTCCGCGCGTTCCACAC
GGCGCGGCGGACGATCCAGGGCTTCGAGGCCATGCTTTGGCTGCGCAAGGGTTTCGGGTTCTCAGGGGCGTGGACGGTCCGGGAGCAGAACCGACTGCTC
GCGCAGTGCTTCGGACTTCCCGTGGCGAACAAAGCGTGAAAGCGGGACGGCAGAGACCCTTCTGCGGCCTGGACCCCAGTTTGCGACAGGCCC
CCTCGCCCTCAAGCTGAAGAGAGAGGCCCGCGGCGACTTCACGGGCCGGCACTTCGAAGCCACTCTCATCGTCCAGGCCGTCTCCTGGTACCTGCGCTAC
GCGCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGTATGGGGGTGGACCACTCCACCATCAACCGCTGGGTGCTGGCCTACGCGCCCGCCA
TCGAGCGGCGCCTGCGCCGGTTCCGCAAGCCGCATTGCGGGTCCGTGAGGGTGGACGAGACCTATATCAAGGTGCGTGGCCAGTGGCGCTATCTGTACCG
GGCCATCGACAAGCATGGCGAGGCGGTCGACTTCCTGCTCACCGCCAACCGCGACCTGGAAGCGGCCAAGCGCTTCTTCCGCAAGATGCTACAGGATCAG
CCGCTTCTCGCGCCCGACCGCATCGGCACCGATGGTGCTGGCCCTTACCCGCCGGCGATCGCCGAGAGCCGCAAGGAGGGCCTGCTGCCACGCGCGCCCA
TCCACCACGTCACCAAGCACTTGCAGCAAGGGATTGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCACGGGTCGGGGGCTTCCGCGCGTTCCACAC
GGCGCGGCGGACGATCCAGGGCTTCGAGGCCATGCTTTGGCTGCGCAAGGGTTTCGGGTTCTCAGGGGCGTGGACGGTCCGGGAGCAGAACCGACTGCTC
GCGCAGTGCTTCGGACTTCCCGTGGCGAACAAAGCGTGAAAGCGGGACGGCAGAGACCCTTCTGCGGCCTGGACCCCAGTTTGCGACAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 87 | 839 | + | No |
Chemistry : DDE
ORF sequence :
MILNALALKLKREARGDFTGRHFEATLIVQAVSWYLRYALSYRDIEEMLLERGMGVDHSTINRWVLAYAPAIERRLRRFRKPHCGSVRVDETYIKVRGQW
RYLYRAIDKHGEAVDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPIHHVTKHLQQGIESDHFRVKRPMPRVGGF
RAFHTARRTIQGFEAMLWLRKGFGFSGAWTVREQNRLLAQCFGLPVANKA
RYLYRAIDKHGEAVDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPIHHVTKHLQQGIESDHFRVKRPMPRVGGF
RAFHTARRTIQGFEAMLWLRKGFGFSGAWTVREQNRLLAQCFGLPVANKA
Blast result :
Comments
ISMtsp1 is 86% similar to ISRle39B.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank