ISMpo1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010727 | ND | Methylobacterium populi | Methylobacterium populi BJ001 plasmid pMPOP01 |
DNA section
IS Length : 888 bp
Ends
IR Length : 15/16
IRL : GGGCCTGTCGCAAACCCGCAGCGTTTACCCCGCGTTGACCATGCAGCCCG
IRR : GGGCCTGTCGCAAGCCGTGCCGTAGGCCGCAGCAGAGGCTAGATCTGTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCGCCCTCGCAGTGGGCAT | ATCGTCGGCGACGAGCCCCA | 0 | |
CCGACGCCTACAAGGAATAC | CGCCCGGCTCGCAGCCGAGC | 0 |
DNA sequence
GGGCCTGTCGCAAACCCGCAGCGTTTACCCCGCGTTGACCATGCAGCCCGCATGGTGCCTCCAGTCCCGGAGGCCACCCCATGATCCTGTCCGCCATCGC
CGCGAAGCTGAAGCAGCGTGCCAAGGCTGACTTCAAGGGCCGGCACTATGAGGCTGCCCTGATCGTCCAGGCCGTCTCCTGGTACCTGCGCTACCCGCTG
AGCTACCGCGACATCGAGGAGCTGTTCCTGGAACGCGGCATGGATGTGGACCACTCCACCCTGAACCGCTGGGTCTTGGCCTACGCGCCGCTGATCGAAA
AGCGGTTGCGGCAGTTCCGCAAACCGCACTGCGGCTCGGTACGCATCGACGAAACGTACATCAAGGTGCGGGGGGAGTGGCGCTATCTCTACCGGGCCGT
CGACAAGCACGGCAATCCAGTCGATTTCCTGCTCACCGCCAATCGGGATCTCGATGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCAGCCGTTG
CTCGCCCCGGATCGCATCGGCACGGATGGCGCCGGCACCTATCCACCCGCCATCTTGGCTGCGAGGAACGACGGCCTTCTACCCCGCGCGCCGCTCCACT
ATGTGACCAAGCACCTGCAGCAGGGCATTGAGAGCGACCACTTTCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCAGTCCTTCCGCACTGCCCG
GCGCACGATCCAGGGGTTCGAGGCCATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCATGGACCATCCGCGAGCAGAACCGACTGCTCGGGGTC
TGCTTCGGCCTTCAGGCGGTTAACAGAGCCTAAAAACGAGACAGATCTAGCCTCTGCTGCGGCCTACGGCACGGCTTGCGACAGGCCC
CGCGAAGCTGAAGCAGCGTGCCAAGGCTGACTTCAAGGGCCGGCACTATGAGGCTGCCCTGATCGTCCAGGCCGTCTCCTGGTACCTGCGCTACCCGCTG
AGCTACCGCGACATCGAGGAGCTGTTCCTGGAACGCGGCATGGATGTGGACCACTCCACCCTGAACCGCTGGGTCTTGGCCTACGCGCCGCTGATCGAAA
AGCGGTTGCGGCAGTTCCGCAAACCGCACTGCGGCTCGGTACGCATCGACGAAACGTACATCAAGGTGCGGGGGGAGTGGCGCTATCTCTACCGGGCCGT
CGACAAGCACGGCAATCCAGTCGATTTCCTGCTCACCGCCAATCGGGATCTCGATGCCGCCAAGCGCTTCTTCCGCAAGATGCTGCAGGATCAGCCGTTG
CTCGCCCCGGATCGCATCGGCACGGATGGCGCCGGCACCTATCCACCCGCCATCTTGGCTGCGAGGAACGACGGCCTTCTACCCCGCGCGCCGCTCCACT
ATGTGACCAAGCACCTGCAGCAGGGCATTGAGAGCGACCACTTTCGGGTCAAGAAGAACATGCCCCGGATCGGCGGCTTCCAGTCCTTCCGCACTGCCCG
GCGCACGATCCAGGGGTTCGAGGCCATGCTGTGGCTGCGCAAGGGCTTCGGCTTTGCCGGCGCATGGACCATCCGCGAGCAGAACCGACTGCTCGGGGTC
TGCTTCGGCCTTCAGGCGGTTAACAGAGCCTAAAAACGAGACAGATCTAGCCTCTGCTGCGGCCTACGGCACGGCTTGCGACAGGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
753 bp | 250 aa | 81 | 833 | + | No |
Chemistry : DDE
ORF sequence :
MILSAIAAKLKQRAKADFKGRHYEAALIVQAVSWYLRYPLSYRDIEELFLERGMDVDHSTLNRWVLAYAPLIEKRLRQFRKPHCGSVRIDETYIKVRGEW
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLQDQPLLAPDRIGTDGAGTYPPAILAARNDGLLPRAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
QSFRTARRTIQGFEAMLWLRKGFGFAGAWTIREQNRLLGVCFGLQAVNRA
RYLYRAVDKHGNPVDFLLTANRDLDAAKRFFRKMLQDQPLLAPDRIGTDGAGTYPPAILAARNDGLLPRAPLHYVTKHLQQGIESDHFRVKKNMPRIGGF
QSFRTARRTIQGFEAMLWLRKGFGFAGAWTIREQNRLLGVCFGLQAVNRA
Blast result :
Comments
ISMpo1 is 89% similar to ISRle39B.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank