ISMysp4
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008146 | ND | Mycobacterium sp. | Mycobacterium sp. MCS |
DNA section
IS Length : 1095 bp
Ends
IR Length : 30/47
IRL : TGTACTGACCACGGACGTTGGTGACGGCGTGGCTTGGTGACATGACGAAG
IRR : TGTACTGACCTGACAGGTTAGGTACGCGGCTGGCGGGTGGTTGACCGCCG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCCCGCGTC | GCTAGC | CGCTCGTCGC | 6 |
DNA sequence
TGTACTGACCACGGACGTTGGTGACGGCGTGGCTTGGTGACATGACGAAGACCTCCGAGTGAAGTGCGAGCTGTCTAGGAACGCACTCATTCACCGGAGG
TCTTCGTGTCCCACCGTAATGCCCCGTTGTCCGAAACCGGTCGTCTGAGGCTGGCTCGCTGCGTCGTTGAGGAGGGCTGGCCGCTGCGCCGGGCTGCTGA
GCGGTACCAGGTCGCTGTGACCACTGCGGCCCGGTGGGCCAGCCGATACCGGGAGCTGGGTCCAGCCGGCATGGTCGATCGCAGCTCCCGGCCGCACCGC
AGTCCCAATCAGACGCCGACTCGCACCGAACGGCGGATCATCAAAGTCCGGGTACTGCGCCGGTGGGGACCTGCTCGGATCGGCTATCTGTTGGGCATTC
ATCCCTCCACTGTCCATCGGGTCCTGACCCGCTACGGGCTGGCCAAACTGTGCTGGTTAGACCGACCCACTGGCCGGGTTGTCCGACGCATCGAAACCTC
CCGGTGCGGGGAGCTGGTGCATGTCGATGTCAAGAAACTCGGCAAGATCCCCGCCGGTGGCGGCTGGCGAATGTTGGGCCGCACGATCGGCAACCGCAAC
TCCAAGGCCGATACGAGCTCGGGGCGTCGCAACAAGTACCGGACCCCGCTGCGCGGTCACCATTTTCTGCACACCGCGATCGACGCCCACTCGCGGTTGG
CCTACTCCGAACTCCTGGCCGATGAACGCAAAGAGACCTCGGCGGGGTTCTGGTTACGGGCCAACGCCTGGTTCGCTGAGTGTGGCATCACTGTGCGGAA
AGTGTTGACCGACAATGGCTCCTGCTACCGATCCCACGCCTTCCGCGACGCACTTGGCGGCATCGAGCACCGGCGCACCCGCCCGTACCGGCCGCAGACC
AACGGCAAGGTGGAGAGATTTCACCGCACCCTGGCCGATGAATGGGCCTACGTCCGGCTCTACACCAGCGACTCCGAACGCTGCGAGCAGTTCCCGATCT
GGCTGCACACCTACAATCACCACCGCGGCCACACCGCACTCGGCGGTCAACCACCCGCCAGCCGCGTACCTAACCTGTCAGGTCAGTACA
TCTTCGTGTCCCACCGTAATGCCCCGTTGTCCGAAACCGGTCGTCTGAGGCTGGCTCGCTGCGTCGTTGAGGAGGGCTGGCCGCTGCGCCGGGCTGCTGA
GCGGTACCAGGTCGCTGTGACCACTGCGGCCCGGTGGGCCAGCCGATACCGGGAGCTGGGTCCAGCCGGCATGGTCGATCGCAGCTCCCGGCCGCACCGC
AGTCCCAATCAGACGCCGACTCGCACCGAACGGCGGATCATCAAAGTCCGGGTACTGCGCCGGTGGGGACCTGCTCGGATCGGCTATCTGTTGGGCATTC
ATCCCTCCACTGTCCATCGGGTCCTGACCCGCTACGGGCTGGCCAAACTGTGCTGGTTAGACCGACCCACTGGCCGGGTTGTCCGACGCATCGAAACCTC
CCGGTGCGGGGAGCTGGTGCATGTCGATGTCAAGAAACTCGGCAAGATCCCCGCCGGTGGCGGCTGGCGAATGTTGGGCCGCACGATCGGCAACCGCAAC
TCCAAGGCCGATACGAGCTCGGGGCGTCGCAACAAGTACCGGACCCCGCTGCGCGGTCACCATTTTCTGCACACCGCGATCGACGCCCACTCGCGGTTGG
CCTACTCCGAACTCCTGGCCGATGAACGCAAAGAGACCTCGGCGGGGTTCTGGTTACGGGCCAACGCCTGGTTCGCTGAGTGTGGCATCACTGTGCGGAA
AGTGTTGACCGACAATGGCTCCTGCTACCGATCCCACGCCTTCCGCGACGCACTTGGCGGCATCGAGCACCGGCGCACCCGCCCGTACCGGCCGCAGACC
AACGGCAAGGTGGAGAGATTTCACCGCACCCTGGCCGATGAATGGGCCTACGTCCGGCTCTACACCAGCGACTCCGAACGCTGCGAGCAGTTCCCGATCT
GGCTGCACACCTACAATCACCACCGCGGCCACACCGCACTCGGCGGTCAACCACCCGCCAGCCGCGTACCTAACCTGTCAGGTCAGTACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 990 bp | 329 aa | 106 | 1095 | + | No |
Chemistry : DDE
ORF sequence :
MSHRNAPLSETGRLRLARCVVEEGWPLRRAAERYQVAVTTAARWASRYRELGPAGMVDRSSRPHRSPNQTPTRTERRIIKVRVLRRWGPARIGYLLGIHP
STVHRVLTRYGLAKLCWLDRPTGRVVRRIETSRCGELVHVDVKKLGKIPAGGGWRMLGRTIGNRNSKADTSSGRRNKYRTPLRGHHFLHTAIDAHSRLAY
SELLADERKETSAGFWLRANAWFAECGITVRKVLTDNGSCYRSHAFRDALGGIEHRRTRPYRPQTNGKVERFHRTLADEWAYVRLYTSDSERCEQFPIWL
HTYNHHRGHTALGGQPPASRVPNLSGQYS
STVHRVLTRYGLAKLCWLDRPTGRVVRRIETSRCGELVHVDVKKLGKIPAGGGWRMLGRTIGNRNSKADTSSGRRNKYRTPLRGHHFLHTAIDAHSRLAY
SELLADERKETSAGFWLRANAWFAECGITVRKVLTDNGSCYRSHAFRDALGGIEHRRTRPYRPQTNGKVERFHRTLADEWAYVRLYTSDSERCEQFPIWL
HTYNHHRGHTALGGQPPASRVPNLSGQYS
Blast result :
Comments
ISMysp4 is 76 % aa similar to ISAni1 . The stop codon is included in DR .
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Martinez,M., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Miller,C.D., Hughes,J.E., Anderson,A.J., Sims,R.C. and Richardson,P.(2006) Direct Submission GenBank.