ISMav5
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002944 | ND | Mycobacterium avium | Mycobacterium avium subsp. paratuberculosis K-10 |
DNA section
IS Length : 1357 bp
Ends
IR Length : 28/43
IRL : TGTATGACCTCGGTTGATGCTTGACGTTTCGGCTTCGGGTGATGCCTGAC
IRR : TGTTCAGAGTCGGTTGATGGGTGACATTTCTATGTCGGTTGATCCTTGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGTTTGTC | GGGGCTCCGT | 0 |
DNA sequence
TGTATGACCTCGGTTGATGCTTGACGTTTCGGCTTCGGGTGATGCCTGACAGTGTTTCGGCTGATGCTTGACAGTTACTTCGGCTGATCCTTGACACTCC
TTCGATGAAGGAGTTAACCGTGGCCGAGCAGAGGTATCAGGCCGTGTTGGCGGTGATCAGCGATGGGTTGTCGATTTCGCTGGTTGCCGAGAAGGTAGGC
GTGTCGCGCCAGACGCTGCACGCGTGGTTGGCCCGCTATGAGGCGTCGGGCCTTGAGGGGCTGGTGGATCGGTCGCATCGGCCGGTGTCGTGTCCGCACC
AGATGCCGGCCGTGGTGGAGGCCGCCCTGTTGGAGCGGCGCCGGTCGCGGCCGTACTGGGGACCACGGCGGCTGGTGTTCGAGCTGGCTAAGCGTCGGGT
GGGTCCGGTGCCGTCGGAGTCGGCGGTGTATCGGGCCTTGGTGCGGGCGGGCATGATCGATCCGGCTTTGCGGGATCGGCGTTCGCGCAAGTGGAAACGT
TGGGAACGCGGCGCCCCGATGGAGCTGTGGCAGATGGATGTGGTGGGGGGTTTCCCGCTGGCCGATGGCACCAGCGCCAAAGCGTTGACCGGCATCGACG
ACCATTCCCGGATGTGTGTCTGCGCGCGGTTGATGGCGCGTGAGCGTACCCGCGCGGTTTGCGACGGATTGCGGGCGGCGCTGGCGGCTTACGGGGCCCC
CCAGCAGATTTTGACTGATAACGGCAAGGTGTTCACCGGCCGGTTTAACCATCCCCCGGTGGAGGTGCTCTTCGACGCGATCTGCCGGCAAAACGGCATC
GACCACCTGCTCACCCAGCCGCGTAGCCCGACGACGACAGGCAAGATTGAGCGGTTCCACCGCAGTCTGCGCGCCGAATTCCTCAGCAACACAAGGGCTT
TCTCAAATCTGAAGACGGCTCAGCAAGCCCTCGACGAATGGGTGCACTACTACAACACCGCCCGTCCGCATCAATCGCTGAACATGACCACCCCAGCCGA
ACGGTTCACCGCCACCGCCTCGCCGGTGAGCCCTGGCGACGACGTACCCGCCAGCATCGACCGAGACGGCCAGGACTGGGTCAGCCGCCGGGTAACGACC
AACGGGGTGGTCAGTGTGGCCTGGCAGCAGGTCTGCGTGGGAGCCCACTACGCCGGGGCCCGCTGCGATGTCCACGTCGACGGTGAGCTGCTGCGGTTCT
GGATCGGCGACCAGTTAGTCAAGACCGCTGCGCGCACCAACCATGCAGAGGTAAGAAACAAACGGGCCTTCCGCACCCGCGAACAGGCCTAACCACTAAC
CCAGAGTGTCAAGGATCAACCGACATAGAAATGTCACCCATCAACCGACTCTGAACA
TTCGATGAAGGAGTTAACCGTGGCCGAGCAGAGGTATCAGGCCGTGTTGGCGGTGATCAGCGATGGGTTGTCGATTTCGCTGGTTGCCGAGAAGGTAGGC
GTGTCGCGCCAGACGCTGCACGCGTGGTTGGCCCGCTATGAGGCGTCGGGCCTTGAGGGGCTGGTGGATCGGTCGCATCGGCCGGTGTCGTGTCCGCACC
AGATGCCGGCCGTGGTGGAGGCCGCCCTGTTGGAGCGGCGCCGGTCGCGGCCGTACTGGGGACCACGGCGGCTGGTGTTCGAGCTGGCTAAGCGTCGGGT
GGGTCCGGTGCCGTCGGAGTCGGCGGTGTATCGGGCCTTGGTGCGGGCGGGCATGATCGATCCGGCTTTGCGGGATCGGCGTTCGCGCAAGTGGAAACGT
TGGGAACGCGGCGCCCCGATGGAGCTGTGGCAGATGGATGTGGTGGGGGGTTTCCCGCTGGCCGATGGCACCAGCGCCAAAGCGTTGACCGGCATCGACG
ACCATTCCCGGATGTGTGTCTGCGCGCGGTTGATGGCGCGTGAGCGTACCCGCGCGGTTTGCGACGGATTGCGGGCGGCGCTGGCGGCTTACGGGGCCCC
CCAGCAGATTTTGACTGATAACGGCAAGGTGTTCACCGGCCGGTTTAACCATCCCCCGGTGGAGGTGCTCTTCGACGCGATCTGCCGGCAAAACGGCATC
GACCACCTGCTCACCCAGCCGCGTAGCCCGACGACGACAGGCAAGATTGAGCGGTTCCACCGCAGTCTGCGCGCCGAATTCCTCAGCAACACAAGGGCTT
TCTCAAATCTGAAGACGGCTCAGCAAGCCCTCGACGAATGGGTGCACTACTACAACACCGCCCGTCCGCATCAATCGCTGAACATGACCACCCCAGCCGA
ACGGTTCACCGCCACCGCCTCGCCGGTGAGCCCTGGCGACGACGTACCCGCCAGCATCGACCGAGACGGCCAGGACTGGGTCAGCCGCCGGGTAACGACC
AACGGGGTGGTCAGTGTGGCCTGGCAGCAGGTCTGCGTGGGAGCCCACTACGCCGGGGCCCGCTGCGATGTCCACGTCGACGGTGAGCTGCTGCGGTTCT
GGATCGGCGACCAGTTAGTCAAGACCGCTGCGCGCACCAACCATGCAGAGGTAAGAAACAAACGGGCCTTCCGCACCCGCGAACAGGCCTAACCACTAAC
CCAGAGTGTCAAGGATCAACCGACATAGAAATGTCACCCATCAACCGACTCTGAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1188 bp | 395 aa | 105 | 1292 | + | No |
Chemistry : DDE
ORF sequence :
MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRPVSCPHQMPAVVEAALLERRRSRPYWGPRRLVFELAKRRVG
PVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKALTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQ
QILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPRSPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAER
FTATASPVSPGDDVPASIDRDGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA
PVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKALTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQ
QILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPRSPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAER
FTATASPVSPGDDVPASIDRDGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA
Blast result :
Comments
ISMav5 is 88% aa similar to ISMav2. There is no stop codon.
References
1] Li,L., Bannantine,J.P., Zhang,Q., Amonsin,A., May,B.J., Alt,D.,Banerji,N., Kanjilal,S. and Kapur,V. (2005) (er) Proc. Natl. Acad. Sci. U.S.A. In press