ISMav3

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008595 ND Mycobacterium avium
Mycobacterium avium 104
DNA section
IS Length : 1091 bp

Ends


IR Length : 31/40

IRL : TGTACTGACCACGGACGTTAGGTACGGCGTGGTGTGGTGACATAACGAAG
IRR : TGTACTGACCTGAGAGGTTAGGTACGCGGGTGGCAGGTGGTTGGCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
TCGGCGCGCAACTAGTCGACGCTCGG6

DNA sequence

TGTACTGACCACGGACGTTAGGTACGGCGTGGTGTGGTGACATAACGAAGACCTCCGAGTGAAGTGCGAGCTGCTGAAGAACGCACAACTCACTCCGGAG
GTCTTCGTGTCCCACCGTAATGCCCCATTGTCTGAAACCGGGCGTCTGCGCTTGGCCCGTTGCGTCGTCGAGGACGGTTGGTCGCTGCGCCGGGCCGCCG
AGCGGTTTCAGGTCGCGGTCACCACAGCCCAGCGCTGGGCTTCGCGTTATCGCGAGCTCGGTCCAGCCGGCATGGCTGATCGCAGCTCACGCCCACTTCG
AAGCCCCAACCAGACACCCACCCGTACCGAGCGCCGGATCATTAAGGTCCGTGTCCTGCGGCGGTGGGGTCCGGCTCGGATCGCTTATCTACTGGGCCTG
AATGTGTCCACAGTGCATCGGGTGCTCACCCGCTACAAGCTGGCCAAACTGCGCTGGCTGGACCGTGCCACCGGCCAGGTCGTCCGCCGGATGGAGGCTG
CGTGCTGCGGAGACCTCGTCCATGTGGACGTCAAGAAGCTCGGCAAGATCCCTGCCGGCGGAGGGTGGCGCATGCTGGGACGCACCGTCGGCAATCGCAA
CGCCCAGGCCGACAAGACTTCAGGAGAGCGCAGCAAGCACCGCCACCCGCTGCGCGGCTACCACTTCCTGCATACCGCGATCGACGCGCACTCGCGGCTG
GCCTACAGCGAGCTGCTAACAGACGAACGCAAAGAGACTGCCGCAGCCTTCTGGCTTCGCGCGCAAGCCTGGTTCACCACATGCGGTTTTACGGTACGAA
AAGTGTTGACCGACAACGGCTCCTGTTACCGATCACATGCGTTCAGGGACGCTCTTGGCGACATCGAGCACCGCCGAACACGCCCCTACCGCCCACAGAC
CAACGGAAAGGTGGAGAGATTCCACCGCACCCTGGCCGACGAATGGGCCTACGCACGGCTTTACCGCAGCGACGCCGAACGCTGCGCCGAGTTCCCCCGC
TGGCTGCACACCTACAATCACCACCGCGGCCACACCGCACTCGGCGGCCAACCACCTGCCACCCGCGTACCTAACCTCTCAGGTCAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1038 bp345 aa591096+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKCELLKNAQLTPEVFVSHRNAPLSETGRLRLARCVVEDGWSLRRAAERFQVAVTTAQRWASRYRELGPAGMADRSSRPLRSPNQTPTRTERRIIKVRVL
RRWGPARIAYLLGLNVSTVHRVLTRYKLAKLRWLDRATGQVVRRMEAACCGDLVHVDVKKLGKIPAGGGWRMLGRTVGNRNAQADKTSGERSKHRHPLRG
YHFLHTAIDAHSRLAYSELLTDERKETAAAFWLRAQAWFTTCGFTVRKVLTDNGSCYRSHAFRDALGDIEHRRTRPYRPQTNGKVERFHRTLADEWAYAR
LYRSDAERCAEFPRWLHTYNHHRGHTALGGQPPATRVPNLSGQYN

 

Blast result :
Comments
ISMav3 is 75% aa similar to ISAni1.
The stop codon is in the DR.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct submission GenBank.