ISMsm9
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008596 | ND | Mycobacterium smegmatis | Mycobacterium smegmatis MC2 155 |
DNA section
IS Length : 1098 bp
Ends
IR Length : 24/30
IRL : TGTACTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACAAGACGAAG
IRR : TGTACTGACCTGAGAGGTTAGGTACACGGCTGGCTGGTGGTTGACCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCTTGGCGC | CCTAGC | TGGGCCCTAA | 6 |
DNA sequence
TGTACTGACCACGGACGTTGGTGACGGCGTGGTGAGGTGACAAGACGAAGACCTCCGAGTGGAGTGCGAGCTGTCTAGGAACGCTCACCGATCTCGGAGG
TCTTCGTGGTTCACCGTAATGCCCCTTTGTCTGAAACTGGTCGTCTGCGTCTGGCTCGTTGCGTTGTCGATGACGGGTGGTCGCGTCGTCGCGCGGCCGA
ACGCTTCCAGGTGTCGGTGACCACTGTCTGTCGGTGGGTGAACCGCTACCTCGAACTGGGCGAGGCCGGAATGGCTGACCGCAGCTCACGACCGCACCAC
AGCCCCAACCGCACCCCGACGCGGACCGAGCGACGCATCATCGGCGTGCGTGTCACCCGGCGTTGGGGGCCCGCTCGGATCGCCTACCTGCTGCGATTGA
ATGTCTCCACGGTGCACAACGTGCTGCGCCGCTACCGCATCGCGCGACTGCGCTGGCTCGACCGCGCCACCGGCCGCGTCGTGCGGCGCATGGAATCGGC
GGCCTGCGGCGATCTGGTGCACGCCGATGTCAAGAAACTCGGCAAGATTCCCGCCGGCGGCGGCTGGCGCATGCTCGGCAGAACAGCGGGACGGAAGAAC
TCGCTGGCCGACAAGAGCAGCGGCGTCAAAACCAGAAACGGCGACCCCGCCCGGGGGTATCACTTCCTGCACTCCGCCTTGGACGCGCATTCCCGTCTGG
TGTACTCCGAGATGCTGGCCGACGAACGCAAAGACACCGCCTCGGAGTTCTGGAAGCGGGCCAACTCCTGGTTCTTCGAACAGGGGGTAATCGTTCGAAC
GGTGTTGACCGACAACGGATCCTGCTACCGATCGCACTCCTTTCGCGAGGCGCTCGGCGATGACATCGAGCATCGCCGCACGCGGCCGTATCGACCGCAG
ACCAACGGCAAAGTGGAACGCTTCCACCGAACCCTCGCCGACGAGTGGGCCTACGCCCGGCTCTACACCAGCGACGAACAACGCTGCCAGGAGTATCCCC
GCTGGTTGCACACCTACAATCACCACCGCGGCCACACAGCACTCGGCGGTCAACCACCAGCCAGCCGTGTACCTAACCTCTCAGGTCAGTACA
TCTTCGTGGTTCACCGTAATGCCCCTTTGTCTGAAACTGGTCGTCTGCGTCTGGCTCGTTGCGTTGTCGATGACGGGTGGTCGCGTCGTCGCGCGGCCGA
ACGCTTCCAGGTGTCGGTGACCACTGTCTGTCGGTGGGTGAACCGCTACCTCGAACTGGGCGAGGCCGGAATGGCTGACCGCAGCTCACGACCGCACCAC
AGCCCCAACCGCACCCCGACGCGGACCGAGCGACGCATCATCGGCGTGCGTGTCACCCGGCGTTGGGGGCCCGCTCGGATCGCCTACCTGCTGCGATTGA
ATGTCTCCACGGTGCACAACGTGCTGCGCCGCTACCGCATCGCGCGACTGCGCTGGCTCGACCGCGCCACCGGCCGCGTCGTGCGGCGCATGGAATCGGC
GGCCTGCGGCGATCTGGTGCACGCCGATGTCAAGAAACTCGGCAAGATTCCCGCCGGCGGCGGCTGGCGCATGCTCGGCAGAACAGCGGGACGGAAGAAC
TCGCTGGCCGACAAGAGCAGCGGCGTCAAAACCAGAAACGGCGACCCCGCCCGGGGGTATCACTTCCTGCACTCCGCCTTGGACGCGCATTCCCGTCTGG
TGTACTCCGAGATGCTGGCCGACGAACGCAAAGACACCGCCTCGGAGTTCTGGAAGCGGGCCAACTCCTGGTTCTTCGAACAGGGGGTAATCGTTCGAAC
GGTGTTGACCGACAACGGATCCTGCTACCGATCGCACTCCTTTCGCGAGGCGCTCGGCGATGACATCGAGCATCGCCGCACGCGGCCGTATCGACCGCAG
ACCAACGGCAAAGTGGAACGCTTCCACCGAACCCTCGCCGACGAGTGGGCCTACGCCCGGCTCTACACCAGCGACGAACAACGCTGCCAGGAGTATCCCC
GCTGGTTGCACACCTACAATCACCACCGCGGCCACACAGCACTCGGCGGTCAACCACCAGCCAGCCGTGTACCTAACCTCTCAGGTCAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 330 aa | 106 | 1098 | + | No |
Chemistry : DDE
ORF sequence :
MVHRNAPLSETGRLRLARCVVDDGWSRRRAAERFQVSVTTVCRWVNRYLELGEAGMADRSSRPHHSPNRTPTRTERRIIGVRVTRRWGPARIAYLLRLNV
STVHNVLRRYRIARLRWLDRATGRVVRRMESAACGDLVHADVKKLGKIPAGGGWRMLGRTAGRKNSLADKSSGVKTRNGDPARGYHFLHSALDAHSRLVY
SEMLADERKDTASEFWKRANSWFFEQGVIVRTVLTDNGSCYRSHSFREALGDDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDEQRCQEYPRW
LHTYNHHRGHTALGGQPPASRVPNLSGQYT
STVHNVLRRYRIARLRWLDRATGRVVRRMESAACGDLVHADVKKLGKIPAGGGWRMLGRTAGRKNSLADKSSGVKTRNGDPARGYHFLHSALDAHSRLVY
SEMLADERKDTASEFWKRANSWFFEQGVIVRTVLTDNGSCYRSHSFREALGDDIEHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDEQRCQEYPRW
LHTYNHHRGHTALGGQPPASRVPNLSGQYT
Blast result :
Comments
ISMsm9 is 73% aa similar to ISAni1. The stop codon is in the DR.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006) Direct submission GenBank.