ISMxa2
- Family IS3
- Group IS407
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008095 | ND | Myxococcus xanthus | Myxococcus xanthus DK 1622 |
DNA section
IS Length : 1244 bp
Ends
IR Length : 28/44
IRL : TGGTCTGCCCCCCGATTTTCGGACCAGTTGAAGCGTGAGAGAGTCCTCGC
IRR : TGCTCTGCCCCCGTTCTTCGGACCACGCGTTACGAGAGTCCTGCGGCGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCGATA | CAGCCGC | 0 |
DNA sequence
TGGTCTGCCCCCCGATTTTCGGACCAGTTGAAGCGTGAGAGAGTCCTCGCGGCCAGGAGGTAGGGCGGTCGTGAGAAAGAGCAGGTTTACCGAGGAGCAG
ATGGTCCGCATCCTGCGGGAGGCGGAGACGCCTGGGGCCAGCGTGGTGGAGGTGGCCCGGAAGCACGGCGTCGTCGAGCAGACGCTCTACCGGTGGCGGC
AGAAGTTCGGCGGCATGGAGGCAGGCGACGCGACGCGGCTCAGGGAGTTGGAGAAGGAGAACGCGCGTCTGAAGAAGCTGCTGGCCGAGAGGGACCTCGA
AATCGAGGTCATGAAGGAAATCTCCACAAAAAAATGGTGAGCGCGCCTGTCCGCCGTCGGCAGGTGCGGTACGCCATGGGGAAAGGCGTGTCGCAGCGCC
GGGCGTGCGCGCTACTCCAGGTGGCCGGCAGTAGCCTGGGCTACGCCAGCCGGAAAGAGGCAAAGGACGCGGCTCTGGTGGCGCAGTTGCGCGACATCGC
CCGGGCACGCCCCCGGTTCGGCTACCGTCGGGCCTGGGCCCTGCTGCGGCGCGAGGGGCCCGCGGTCAACGTGAAGCGAGTGCATCGGCTCTGGAGGAAG
GAGGGACTGGCGCTCTCTCGGAGACGGCCAAGGAAACGGCTTCGGCTGGGGCAGCAACGCCAACCCAAGCCGGAGGGCGTCAACTCGGTATGGGCCTGGG
ACTTCGTGCACGACAGGTGCGCAAATGGGCAGAAGCTCAAGTGCCTCACTGTCGTGGATGAACACAGCCGAGAGTGCCTGGCCATCGACGTGGCCGGGCG
CATCAGTGCCAGGCGCGTCATCGAGGTGCTCTCGCGCCTGGTAGCAGTGCACGGGCCGCCGAAGTACCTCAGAAGCGACAACGGCCCCGAGTTCATCGCC
AAGGCCCTGCGCAGGTGGCTGGAGGCCAATGGCATTCAGACGGCCTACATCGCTCCAGGCAAGCCCTGGCAGAACGGTACCAACGAAAGCTTCAACGGCC
GCTTCCGGGACGAGTGCCTGTCAGCGGAGTGGTTTTCCACCAGGAGGGAGGCCGTCGTCCTCATCGAGGCGTGGCGGCGCGACTACAACGAGAAGCGCCC
GCACAGCAGTTTGGGCTACAAGACACCTGCGGAGGTCGGAGCTCGCCGTGCCCATGCCGGCCCCGTCGCATCATCCCTCGAGCACGGCATCAGCAGCGCC
GCAGGACTCTCGTAACGCGTGGTCCGAAGAACGGGGGCAGAGCA
ATGGTCCGCATCCTGCGGGAGGCGGAGACGCCTGGGGCCAGCGTGGTGGAGGTGGCCCGGAAGCACGGCGTCGTCGAGCAGACGCTCTACCGGTGGCGGC
AGAAGTTCGGCGGCATGGAGGCAGGCGACGCGACGCGGCTCAGGGAGTTGGAGAAGGAGAACGCGCGTCTGAAGAAGCTGCTGGCCGAGAGGGACCTCGA
AATCGAGGTCATGAAGGAAATCTCCACAAAAAAATGGTGAGCGCGCCTGTCCGCCGTCGGCAGGTGCGGTACGCCATGGGGAAAGGCGTGTCGCAGCGCC
GGGCGTGCGCGCTACTCCAGGTGGCCGGCAGTAGCCTGGGCTACGCCAGCCGGAAAGAGGCAAAGGACGCGGCTCTGGTGGCGCAGTTGCGCGACATCGC
CCGGGCACGCCCCCGGTTCGGCTACCGTCGGGCCTGGGCCCTGCTGCGGCGCGAGGGGCCCGCGGTCAACGTGAAGCGAGTGCATCGGCTCTGGAGGAAG
GAGGGACTGGCGCTCTCTCGGAGACGGCCAAGGAAACGGCTTCGGCTGGGGCAGCAACGCCAACCCAAGCCGGAGGGCGTCAACTCGGTATGGGCCTGGG
ACTTCGTGCACGACAGGTGCGCAAATGGGCAGAAGCTCAAGTGCCTCACTGTCGTGGATGAACACAGCCGAGAGTGCCTGGCCATCGACGTGGCCGGGCG
CATCAGTGCCAGGCGCGTCATCGAGGTGCTCTCGCGCCTGGTAGCAGTGCACGGGCCGCCGAAGTACCTCAGAAGCGACAACGGCCCCGAGTTCATCGCC
AAGGCCCTGCGCAGGTGGCTGGAGGCCAATGGCATTCAGACGGCCTACATCGCTCCAGGCAAGCCCTGGCAGAACGGTACCAACGAAAGCTTCAACGGCC
GCTTCCGGGACGAGTGCCTGTCAGCGGAGTGGTTTTCCACCAGGAGGGAGGCCGTCGTCCTCATCGAGGCGTGGCGGCGCGACTACAACGAGAAGCGCCC
GCACAGCAGTTTGGGCTACAAGACACCTGCGGAGGTCGGAGCTCGCCGTGCCCATGCCGGCCCCGTCGCATCATCCCTCGAGCACGGCATCAGCAGCGCC
GCAGGACTCTCGTAACGCGTGGTCCGAAGAACGGGGGCAGAGCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
267 bp | 88 aa | 74 | 340 | + | No |
Description : First part of the transposase
ORF sequence :
MRKSRFTEEQMVRILREAETPGASVVEVARKHGVVEQTLYRWRQKFGGMEAGDATRLRELEKENARLKKLLAERDLEIEVMKEISTKKW
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1152 bp | 383 aa | 64 | 1215 | + | No |
Description : Second part of the transposase
ORF sequence :
GGREKEQVYRGADGPHPAGGGDAWGQRGGGGPEARRRRADALPVAAEVRRHGGRRRDAAQGVGEGERASEEAAGREGPRNRGHEGNLHKKMVSAPVRRRQ
VRYAMGKGVSQRRACALLQVAGSSLGYASRKEAKDAALVAQLRDIARARPRFGYRRAWALLRREGPAVNVKRVHRLWRKEGLALSRRRPRKRLRLGQQRQ
PKPEGVNSVWAWDFVHDRCANGQKLKCLTVVDEHSRECLAIDVAGRISARRVIEVLSRLVAVHGPPKYLRSDNGPEFIAKALRRWLEANGIQTAYIAPGK
PWQNGTNESFNGRFRDECLSAEWFSTRREAVVLIEAWRRDYNEKRPHSSLGYKTPAEVGARRAHAGPVASSLEHGISSAAGLS
VRYAMGKGVSQRRACALLQVAGSSLGYASRKEAKDAALVAQLRDIARARPRFGYRRAWALLRREGPAVNVKRVHRLWRKEGLALSRRRPRKRLRLGQQRQ
PKPEGVNSVWAWDFVHDRCANGQKLKCLTVVDEHSRECLAIDVAGRISARRVIEVLSRLVAVHGPPKYLRSDNGPEFIAKALRRWLEANGIQTAYIAPGK
PWQNGTNESFNGRFRDECLSAEWFSTRREAVVLIEAWRRDYNEKRPHSSLGYKTPAEVGARRAHAGPVASSLEHGISSAAGLS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1142 bp | 381 aa | 74 | 1215 | + | Yes |
Chemistry : DDE
ORF sequence :
MRKSRFTEEQMVRILREAETPGASVVEVARKHGVVEQTLYRWRQKFGGMEAGDATRLRELEKENARLKKLLAERDLEIEVMKEISTKKMVSAPVRRRQVR
YAMGKGVSQRRACALLQVAGSSLGYASRKEAKDAALVAQLRDIARARPRFGYRRAWALLRREGPAVNVKRVHRLWRKEGLALSRRRPRKRLRLGQQRQPK
PEGVNSVWAWDFVHDRCANGQKLKCLTVVDEHSRECLAIDVAGRISARRVIEVLSRLVAVHGPPKYLRSDNGPEFIAKALRRWLEANGIQTAYIAPGKPW
QNGTNESFNGRFRDECLSAEWFSTRREAVVLIEAWRRDYNEKRPHSSLGYKTPAEVGARRAHAGPVASSLEHGISSAAGLS
YAMGKGVSQRRACALLQVAGSSLGYASRKEAKDAALVAQLRDIARARPRFGYRRAWALLRREGPAVNVKRVHRLWRKEGLALSRRRPRKRLRLGQQRQPK
PEGVNSVWAWDFVHDRCANGQKLKCLTVVDEHSRECLAIDVAGRISARRVIEVLSRLVAVHGPPKYLRSDNGPEFIAKALRRWLEANGIQTAYIAPGKPW
QNGTNESFNGRFRDECLSAEWFSTRREAVVLIEAWRRDYNEKRPHSSLGYKTPAEVGARRAHAGPVASSLEHGISSAAGLS
Blast result :
Comments
ISMxa2 is 85% (ORFA) and 67% (ORFB) aa similar to ISBp1. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Goldman,B.S., Nierman,W.C., Kaiser,D., Slater,S.C., Durkin,A.S., Eisen,J.A., Ronning,C.M., Barbazuk,W.B., Blanchard,M., Field,C., Halling,C., Hinkle,G., Iartchuk,O., Kim,H.S., Mackenzie,C., Madupu,R., Miller,N., Shvartsbeyn,A., Sullivan,S.A., Vaudin,M., Wiegand,R. and Kaplan,H.B. (2006) Proc. Natl. Acad. Sci. U.S.A. 103 (41), 15200-15205.