ISMca5
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002977 | ND | Methylococcus capsulatus | Methylococcus capsulatus Bath |
DNA section
IS Length : 1390 bp
Ends
IR Length : 22/29
IRL : GAGCCTGTCAGGAATTTTGTGTTTGAGGCATAGCATGTTGGAAAGGAGCA
IRR : GGGACTGTCTGAATTTTTGTGTTCAAGGCTCTTTATTCGGGCTGCCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGAACGCCC | GCGTGCGA | AACCACATCG | 8 |
GGTCTTGCGG | ATCGTCCG | AATCCGCCGC | 8 |
DNA sequence
GAGCCTGTCAGGAATTTTGTGTTTGAGGCATAGCATGTTGGAAAGGAGCATCTATGCCAAGCAAGAAGAAACCGGCGGCAGCCGGCATGACGGCGCTGCC
GTCTATTCCCCACGAGCTCATTGAACAATTGACCGGCGGCGCCACGCCGATGACGGCCGAACAGATCAACGCCACCACCATGGCGCTGAAGAAAGCGCTG
ATCGAGCGTGCGCTGGGCGCAGAGCTGTCGTACCACCTGGGCTATCCGCCCGGCAGCGCCCGCCCCGAGGATGCAGCCAACCAGCGCAACGGCAAGTCCG
CCAAGACGGTGCTGACTCAGGACGGGCCGCTGCGCATCGAGGTGCCGCGCGACCGCGCAGGCTCCTTCGAGCCCATCCTGATCCCCAAGCACGAGCGGCG
TTTCACGGGCTTTGACGACAAGATCGTGGCCATGTACGCGCGGGGCATGACCGTGCGTGAGATCCAGGGCTTCCTGGCTGAGCAGTACGGCACCGAGGTC
AGTCCTGAATTCATCAGTTGTGTCACGGATGAGGTGATGGCCGAGGTCACCGCCTGGCAGGGCAGGCCGTTGGAGCCGATGTACCCGGTCGTATTCTTCG
ACTGTCTGCGGGTCAAGATCCGCGAGGATGCCGTGGTGCGCAACAAGGCCATCTATCTGGCGCTGGGCGTGCTGCCCGACGGTACGCGCGACATCCTGGG
CCTGTGGATCGAGAACACCGAAGGGGCCAAGTTCTGGATGAAGGTGTTCAACGATCTGAAGACGCGCGGCGTGGCCGACATCCTGATTGCCGTCACCGAC
GGGCTCAAGGGCATTCCCGAGGCGCTTGGGGCGGTGTTTCCGGCCACGACGCTGCAGACCTGTATCGTGCACTTGATCCGCAACAGCCTGGACTATGCCA
GCTGGAAGGACCGCAAAGCGCTGGCTGCGGCGCTCAAGCCCATCTACACGGCGCCCAGCGCAGAAGCCGCAGCGGTCGAACTCGATGCCCTGGAGGCTGG
CCCCTGGGGGCAGAAGTTCCCCACGGTGGTGGCGACCTGGCGCCGGGCCTGGGACCGCGTCATTCCGTTTTTTGCGTTCAGCCCGGCGGTGCGCAGAGTG
ATCTACACGACCAATGCCATCGAGAGCCTGCACAGTCAGCTGCGCAAGATCATCAAGACGCGGGGGCACTTTCCCAATGACGAGGCCGCCACCAAGCTGC
TGTGGCTGGCCTTGCGCAACATCACGGCTGACTGGGGCCGAGCAGCCAGGGAGTGGAAAGACGCCATGAACCAGTTCGCCATCGCCTAGGGGGAGCGCTT
TACACGACCGGCCGCGTAATATGTCCACTGGGCTCGTCTGAAACGGCAGCCCGAATAAAGAGCCTTGAACACAAAAATTCAGACAGTCCC
GTCTATTCCCCACGAGCTCATTGAACAATTGACCGGCGGCGCCACGCCGATGACGGCCGAACAGATCAACGCCACCACCATGGCGCTGAAGAAAGCGCTG
ATCGAGCGTGCGCTGGGCGCAGAGCTGTCGTACCACCTGGGCTATCCGCCCGGCAGCGCCCGCCCCGAGGATGCAGCCAACCAGCGCAACGGCAAGTCCG
CCAAGACGGTGCTGACTCAGGACGGGCCGCTGCGCATCGAGGTGCCGCGCGACCGCGCAGGCTCCTTCGAGCCCATCCTGATCCCCAAGCACGAGCGGCG
TTTCACGGGCTTTGACGACAAGATCGTGGCCATGTACGCGCGGGGCATGACCGTGCGTGAGATCCAGGGCTTCCTGGCTGAGCAGTACGGCACCGAGGTC
AGTCCTGAATTCATCAGTTGTGTCACGGATGAGGTGATGGCCGAGGTCACCGCCTGGCAGGGCAGGCCGTTGGAGCCGATGTACCCGGTCGTATTCTTCG
ACTGTCTGCGGGTCAAGATCCGCGAGGATGCCGTGGTGCGCAACAAGGCCATCTATCTGGCGCTGGGCGTGCTGCCCGACGGTACGCGCGACATCCTGGG
CCTGTGGATCGAGAACACCGAAGGGGCCAAGTTCTGGATGAAGGTGTTCAACGATCTGAAGACGCGCGGCGTGGCCGACATCCTGATTGCCGTCACCGAC
GGGCTCAAGGGCATTCCCGAGGCGCTTGGGGCGGTGTTTCCGGCCACGACGCTGCAGACCTGTATCGTGCACTTGATCCGCAACAGCCTGGACTATGCCA
GCTGGAAGGACCGCAAAGCGCTGGCTGCGGCGCTCAAGCCCATCTACACGGCGCCCAGCGCAGAAGCCGCAGCGGTCGAACTCGATGCCCTGGAGGCTGG
CCCCTGGGGGCAGAAGTTCCCCACGGTGGTGGCGACCTGGCGCCGGGCCTGGGACCGCGTCATTCCGTTTTTTGCGTTCAGCCCGGCGGTGCGCAGAGTG
ATCTACACGACCAATGCCATCGAGAGCCTGCACAGTCAGCTGCGCAAGATCATCAAGACGCGGGGGCACTTTCCCAATGACGAGGCCGCCACCAAGCTGC
TGTGGCTGGCCTTGCGCAACATCACGGCTGACTGGGGCCGAGCAGCCAGGGAGTGGAAAGACGCCATGAACCAGTTCGCCATCGCCTAGGGGGAGCGCTT
TACACGACCGGCCGCGTAATATGTCCACTGGGCTCGTCTGAAACGGCAGCCCGAATAAAGAGCCTTGAACACAAAAATTCAGACAGTCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1236 bp | 411 aa | 54 | 1289 | + | No |
Chemistry : DDE
ORF sequence :
MPSKKKPAAAGMTALPSIPHELIEQLTGGATPMTAEQINATTMALKKALIERALGAELSYHLGYPPGSARPEDAANQRNGKSAKTVLTQDGPLRIEVPRD
RAGSFEPILIPKHERRFTGFDDKIVAMYARGMTVREIQGFLAEQYGTEVSPEFISCVTDEVMAEVTAWQGRPLEPMYPVVFFDCLRVKIREDAVVRNKAI
YLALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVADILIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAALKPIYTA
PSAEAAAVELDALEAGPWGQKFPTVVATWRRAWDRVIPFFAFSPAVRRVIYTTNAIESLHSQLRKIIKTRGHFPNDEAATKLLWLALRNITADWGRAARE
WKDAMNQFAIA
RAGSFEPILIPKHERRFTGFDDKIVAMYARGMTVREIQGFLAEQYGTEVSPEFISCVTDEVMAEVTAWQGRPLEPMYPVVFFDCLRVKIREDAVVRNKAI
YLALGVLPDGTRDILGLWIENTEGAKFWMKVFNDLKTRGVADILIAVTDGLKGIPEALGAVFPATTLQTCIVHLIRNSLDYASWKDRKALAAALKPIYTA
PSAEAAAVELDALEAGPWGQKFPTVVATWRRAWDRVIPFFAFSPAVRRVIYTTNAIESLHSQLRKIIKTRGHFPNDEAATKLLWLALRNITADWGRAARE
WKDAMNQFAIA
Blast result :
Comments
There are 2 copies of ISMca5 in this strain. ISMca5 is 91% aa similar to ISCsp1.
References
1] Ward,N., Larsen,O., Sakwa,J., Bruseth,L., Khouri,H., Durkin,A.S., Dimitrov,G., Jiang,L., Scanlan,D., Kang,K.H., Lewis,M., Nelson,K.E., Methe,B., Wu,M., Heidelberg,J.F., Paulsen,I.T., Fouts,D., Ravel,J., Tettelin,H., Ren,Q., Read,T., DeBoy,R.T., Seshadri,R., Salzberg,S.L., Jensen,H.B., Birkeland,N.K., Nelson,W.C., Dodson,R.J., Grindhaug,S.H., Holt,I., Eidhammer,I., Jonasen,I., Vanaken,S., Utterback,T., Feldblyum,T.V., Fraser,C.M., Lillehaug,J.R. and Eisen,J.A. (2004) PLoS Biol. 2(10):e303.