ISOan3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS990628 | ND | Octadecabacter antarcticus | Octadecabacter antarcticus 238 |
DNA section
IS Length : 1437 bp
Ends
IR Length : 21/25
IRL : GGGAATGTCCCGAAGAATGTTGAAATTTTAATTTAGGGTGGCGTTGCTTC
IRR : GGGGATGTCCCGTACGATGTTGAAAATCGGGCGAGTGGCGCTGCTTGATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACCGTCAGA | CGCAGGAC | CCCTGCCAGA | 8 |
DNA sequence
GGGAATGTCCCGAAGAATGTTGAAATTTTAATTTAGGGTGGCGTTGCTTCCCCTGAGCCGTAGGCTCTGGGTGTTTAATCGCAAAAGGAAGCAACACCAT
GAAGAAGACTATCACAGCAAGCGCTGGACTTGCCAGCGCGTCGAATGTTCATCAACTCGTGGAAACAGCCTGGGACAAAGTTGGCGAGAGCTTCGAGCAG
TTCTGCCTGACGGCGGGCGTCGCCAGTCTGGTTCAGATGTTTGGTGAGGACGCAGATACGCTGGCGGGTGGCCGATACGAGCATTGCACTGACAAGCCTG
GCCACAGATGGGGCACCGCGAAAGGTCAGGTTGGGTTCCATGGTGGGAAGATTGAGCTGGAGCGCGCCCGTGTGCGCGATAAAGTGACCGGTAAAGAGAT
TGTCCTGCCGAGCTGGGAAGAGGCCTCCTCGGGTGGCTTCCTTGAACAATGGGCAATGAGCCTAATGTTGATGAATGTTTCCACCCATAAGTATGACCGA
GCTGTACGGCTGCCCGAAGCGAAGGTGCCTAATAAGGCAGGGAGCGGGCTGTCCAGGTCAGCAGTTTCGCGTCGCTTCAAAGCACTCACCCAAGCGCGCC
TGGATGAGTGGATGTCATCTGATCTATCGGAGCTTGACCTTGTAGCGATCCAGATCGACGGGCTGCATTTGGACGATCATTTGTTGGTGCTTGCGGCCGT
GGGTGTGGAGGTTTCAGGCGAAAAGCACCCTCTGGGCGTCATTGAAGGGGCGACCGAGAACGCCGCGACGGTTCAGGCGCTTTTGGACAATCTGATAGAG
CGTGGGCTCGATCCAGCGGGCTGCTATTTGTTCATCGTAGATGGGGCTAAGGCACTGACCAAGGCAATTCGGCGCACATTTGGTGCCGATATTCCCATCC
AAAGATGCCAGATACACAAGGCCCGCAACATAACTGACAGGCTTCCTCCAAAGCTGCACGCCTCCGTACGCCGCGCGCTGAAGCAAGCATGGGAGCTTGA
TGATGCCGACAAAGCCGAGCGGTTGATGCGGAATCTTGCCCAGCGACTAGAGCTTGAGGCTCCGGACGTTTCAAAGTCGATCCTTGAGGGCCTAGACGAA
ATTCTAACTGTTGTTAGGTTGGGGCTACCTGTGGAATTGAGACGCTCATTGGCCAGCACCAACATCATTGAATCTATGAACAGCGTGATCCGACAGGTCT
GTCGAAACGTCAAACGCTGGCGCGATGCAAAAATGGCGCTGCGCTGGACAGGGGCTGGTATGCTGGAAGCCGCGAAAGGCTTCCGCCGCCTAAAGGCCTA
CAAGCAACTCCCCATTCTCAAGCAAGCTTTGCTAGATCATCGCAATACCGTAACGCTTGACCAAATCAAGGACGTCGCCTAACCATCAATCAAGCAGCGC
CACTCGCCCGATTTTCAACATCGTACGGGACATCCCC
GAAGAAGACTATCACAGCAAGCGCTGGACTTGCCAGCGCGTCGAATGTTCATCAACTCGTGGAAACAGCCTGGGACAAAGTTGGCGAGAGCTTCGAGCAG
TTCTGCCTGACGGCGGGCGTCGCCAGTCTGGTTCAGATGTTTGGTGAGGACGCAGATACGCTGGCGGGTGGCCGATACGAGCATTGCACTGACAAGCCTG
GCCACAGATGGGGCACCGCGAAAGGTCAGGTTGGGTTCCATGGTGGGAAGATTGAGCTGGAGCGCGCCCGTGTGCGCGATAAAGTGACCGGTAAAGAGAT
TGTCCTGCCGAGCTGGGAAGAGGCCTCCTCGGGTGGCTTCCTTGAACAATGGGCAATGAGCCTAATGTTGATGAATGTTTCCACCCATAAGTATGACCGA
GCTGTACGGCTGCCCGAAGCGAAGGTGCCTAATAAGGCAGGGAGCGGGCTGTCCAGGTCAGCAGTTTCGCGTCGCTTCAAAGCACTCACCCAAGCGCGCC
TGGATGAGTGGATGTCATCTGATCTATCGGAGCTTGACCTTGTAGCGATCCAGATCGACGGGCTGCATTTGGACGATCATTTGTTGGTGCTTGCGGCCGT
GGGTGTGGAGGTTTCAGGCGAAAAGCACCCTCTGGGCGTCATTGAAGGGGCGACCGAGAACGCCGCGACGGTTCAGGCGCTTTTGGACAATCTGATAGAG
CGTGGGCTCGATCCAGCGGGCTGCTATTTGTTCATCGTAGATGGGGCTAAGGCACTGACCAAGGCAATTCGGCGCACATTTGGTGCCGATATTCCCATCC
AAAGATGCCAGATACACAAGGCCCGCAACATAACTGACAGGCTTCCTCCAAAGCTGCACGCCTCCGTACGCCGCGCGCTGAAGCAAGCATGGGAGCTTGA
TGATGCCGACAAAGCCGAGCGGTTGATGCGGAATCTTGCCCAGCGACTAGAGCTTGAGGCTCCGGACGTTTCAAAGTCGATCCTTGAGGGCCTAGACGAA
ATTCTAACTGTTGTTAGGTTGGGGCTACCTGTGGAATTGAGACGCTCATTGGCCAGCACCAACATCATTGAATCTATGAACAGCGTGATCCGACAGGTCT
GTCGAAACGTCAAACGCTGGCGCGATGCAAAAATGGCGCTGCGCTGGACAGGGGCTGGTATGCTGGAAGCCGCGAAAGGCTTCCGCCGCCTAAAGGCCTA
CAAGCAACTCCCCATTCTCAAGCAAGCTTTGCTAGATCATCGCAATACCGTAACGCTTGACCAAATCAAGGACGTCGCCTAACCATCAATCAAGCAGCGC
CACTCGCCCGATTTTCAACATCGTACGGGACATCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1284 bp | 427 aa | 99 | 1382 | + | No |
Chemistry : DDE
ORF sequence :
MKKTITASAGLASASNVHQLVETAWDKVGESFEQFCLTAGVASLVQMFGEDADTLAGGRYEHCTDKPGHRWGTAKGQVGFHGGKIELERARVRDKVTGKE
IVLPSWEEASSGGFLEQWAMSLMLMNVSTHKYDRAVRLPEAKVPNKAGSGLSRSAVSRRFKALTQARLDEWMSSDLSELDLVAIQIDGLHLDDHLLVLAA
VGVEVSGEKHPLGVIEGATENAATVQALLDNLIERGLDPAGCYLFIVDGAKALTKAIRRTFGADIPIQRCQIHKARNITDRLPPKLHASVRRALKQAWEL
DDADKAERLMRNLAQRLELEAPDVSKSILEGLDEILTVVRLGLPVELRRSLASTNIIESMNSVIRQVCRNVKRWRDAKMALRWTGAGMLEAAKGFRRLKA
YKQLPILKQALLDHRNTVTLDQIKDVA
IVLPSWEEASSGGFLEQWAMSLMLMNVSTHKYDRAVRLPEAKVPNKAGSGLSRSAVSRRFKALTQARLDEWMSSDLSELDLVAIQIDGLHLDDHLLVLAA
VGVEVSGEKHPLGVIEGATENAATVQALLDNLIERGLDPAGCYLFIVDGAKALTKAIRRTFGADIPIQRCQIHKARNITDRLPPKLHASVRRALKQAWEL
DDADKAERLMRNLAQRLELEAPDVSKSILEGLDEILTVVRLGLPVELRRSLASTNIIESMNSVIRQVCRNVKRWRDAKMALRWTGAGMLEAAKGFRRLKA
YKQLPILKQALLDHRNTVTLDQIKDVA
Blast result :
Comments
ISOan3 is 79% aa similar to ISApr10.
References
1] ISfinder annotation (2010)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. ( 2008) Direct submission GenBank.
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. ( 2008) Direct submission GenBank.