ISOan3

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS990628 ND Octadecabacter antarcticus
Octadecabacter antarcticus 238
DNA section
IS Length : 1437 bp

Ends


IR Length : 21/25

IRL : GGGAATGTCCCGAAGAATGTTGAAATTTTAATTTAGGGTGGCGTTGCTTC
IRR : GGGGATGTCCCGTACGATGTTGAAAATCGGGCGAGTGGCGCTGCTTGATT

Insertion site


Left flankDirect repeatRight flankDR Length
GACCGTCAGACGCAGGACCCCTGCCAGA8

DNA sequence

GGGAATGTCCCGAAGAATGTTGAAATTTTAATTTAGGGTGGCGTTGCTTCCCCTGAGCCGTAGGCTCTGGGTGTTTAATCGCAAAAGGAAGCAACACCAT
GAAGAAGACTATCACAGCAAGCGCTGGACTTGCCAGCGCGTCGAATGTTCATCAACTCGTGGAAACAGCCTGGGACAAAGTTGGCGAGAGCTTCGAGCAG
TTCTGCCTGACGGCGGGCGTCGCCAGTCTGGTTCAGATGTTTGGTGAGGACGCAGATACGCTGGCGGGTGGCCGATACGAGCATTGCACTGACAAGCCTG
GCCACAGATGGGGCACCGCGAAAGGTCAGGTTGGGTTCCATGGTGGGAAGATTGAGCTGGAGCGCGCCCGTGTGCGCGATAAAGTGACCGGTAAAGAGAT
TGTCCTGCCGAGCTGGGAAGAGGCCTCCTCGGGTGGCTTCCTTGAACAATGGGCAATGAGCCTAATGTTGATGAATGTTTCCACCCATAAGTATGACCGA
GCTGTACGGCTGCCCGAAGCGAAGGTGCCTAATAAGGCAGGGAGCGGGCTGTCCAGGTCAGCAGTTTCGCGTCGCTTCAAAGCACTCACCCAAGCGCGCC
TGGATGAGTGGATGTCATCTGATCTATCGGAGCTTGACCTTGTAGCGATCCAGATCGACGGGCTGCATTTGGACGATCATTTGTTGGTGCTTGCGGCCGT
GGGTGTGGAGGTTTCAGGCGAAAAGCACCCTCTGGGCGTCATTGAAGGGGCGACCGAGAACGCCGCGACGGTTCAGGCGCTTTTGGACAATCTGATAGAG
CGTGGGCTCGATCCAGCGGGCTGCTATTTGTTCATCGTAGATGGGGCTAAGGCACTGACCAAGGCAATTCGGCGCACATTTGGTGCCGATATTCCCATCC
AAAGATGCCAGATACACAAGGCCCGCAACATAACTGACAGGCTTCCTCCAAAGCTGCACGCCTCCGTACGCCGCGCGCTGAAGCAAGCATGGGAGCTTGA
TGATGCCGACAAAGCCGAGCGGTTGATGCGGAATCTTGCCCAGCGACTAGAGCTTGAGGCTCCGGACGTTTCAAAGTCGATCCTTGAGGGCCTAGACGAA
ATTCTAACTGTTGTTAGGTTGGGGCTACCTGTGGAATTGAGACGCTCATTGGCCAGCACCAACATCATTGAATCTATGAACAGCGTGATCCGACAGGTCT
GTCGAAACGTCAAACGCTGGCGCGATGCAAAAATGGCGCTGCGCTGGACAGGGGCTGGTATGCTGGAAGCCGCGAAAGGCTTCCGCCGCCTAAAGGCCTA
CAAGCAACTCCCCATTCTCAAGCAAGCTTTGCTAGATCATCGCAATACCGTAACGCTTGACCAAATCAAGGACGTCGCCTAACCATCAATCAAGCAGCGC
CACTCGCCCGATTTTCAACATCGTACGGGACATCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1284 bp427 aa991382+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKKTITASAGLASASNVHQLVETAWDKVGESFEQFCLTAGVASLVQMFGEDADTLAGGRYEHCTDKPGHRWGTAKGQVGFHGGKIELERARVRDKVTGKE
IVLPSWEEASSGGFLEQWAMSLMLMNVSTHKYDRAVRLPEAKVPNKAGSGLSRSAVSRRFKALTQARLDEWMSSDLSELDLVAIQIDGLHLDDHLLVLAA
VGVEVSGEKHPLGVIEGATENAATVQALLDNLIERGLDPAGCYLFIVDGAKALTKAIRRTFGADIPIQRCQIHKARNITDRLPPKLHASVRRALKQAWEL
DDADKAERLMRNLAQRLELEAPDVSKSILEGLDEILTVVRLGLPVELRRSLASTNIIESMNSVIRQVCRNVKRWRDAKMALRWTGAGMLEAAKGFRRLKA
YKQLPILKQALLDHRNTVTLDQIKDVA

 

Blast result :
Comments
ISOan3 is 79% aa similar to ISApr10.
References
1] ISfinder annotation (2010)
2] Brinkhoff,T., Wawrik,B., Simon,M., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. ( 2008) Direct submission GenBank.