ISMasp1
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Magnetococcus sp. | Magnetococcus sp. MC-1 |
DNA section
IS Length : 1907 bp
Ends
IR Length : 11
IRL : CCGGACTTTCTTGCAGAAATCTAAGATTCATATTTAAAAACAGCAAGATA
IRR : CCGGACTTTCTGCTTAAAAAGCGTATAAAGCATTGATATTAAGCTGTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGAACTTGA | GCCAAATGCC | 0 |
DNA sequence
CCGGACTTTCTTGCAGAAATCTAAGATTCATATTTAAAAACAGCAAGATATGCAAATTCACCTGATTTTTGTAGTCATGTAATGTTTGTTTTTATTCATT
TAATATTTGAATTTTTCTGCTATAATCATAGCCATGCATATTGAACGTGTTCCCAATCGAAATTCACACCCAACCGTGCTGCTGCGGGAATCCTACCGTG
AAAACGGTAAGGTCAAAAAGCGCACCCTGGGTAACTTGACTGGTCAACCCGAGGAGACCATTGAGGCTTTGCGTGTGGTGCTCAAGGGTGGACGCATGAT
GCCGATGACCTCAGCCCTGACCATTGAGGCCAGTCTGCCTCATGGCCATGTCGCTGCTGTCGTCGGAGTGATAAAATCCCTGGGCCTTAAAAGTTTGCTG
GGAACAAAACAAACGCGCTACCGCAATTTAATCCTGGCGCTGATTGCCCAGAGAGTGCTTCAACCTGCATCAAAACTGGCCTCGCACCGGCTGTTCAACA
CGACCACCTTGGGGCAGGAGTTCGGCGTGGCTGACGCCAACAAGGAAGAACTTTACAAAGCCCTCGATTGGCTCGGAGCGCAACAGGAACGCATGGAGAA
TCGCTTGGTGAAACAGCACCTTAAGGATGGCTCCATGGTACTGTTTGATCTCACTTCCACCTATCTGGAAGGAAGACAGTGTGAACTGGCTGAGTACGGC
TACAGCCGCGACCACCGCCCAGACAAACTCCAGATTGAGATTGGCCTGCTGTGCGACAAGGAGGGTCGCCCTCTGGCCGTGGAGGTGTTTCCCGGCAATA
CAGGCGATCCCACTACGCTGACCGCCCAAGTGAACAAGCTCAAGGCGCGCTTTGGCCTCAAACAGGTCATAGTTGTTGGTGATCGGGGTATGATCACCCA
GGCCCGGATTGACGAAGATCTCCAACCTGCTGGTTTTTCATGGATTACCGCCTTGCGCCACAGCACCATCCGATCACTGGCCAAAGCAGACAACTGGCCT
TCTTTATTCGATGCGCGCAACTTTGCCGAGATCACCTCCCCAGATTTCCCAGGTGAGCGACTGATGGTCTGCCGCAATCCCTTCCTGGCCGAGGATCAGG
GGCGATCACGACGGGAACTGTTGACCATCGCAGAACAGGGGTTGGAGACGATCCTGCAAGCCGTGCAAGAGGGCTCTTTGCGTGATTGTGGTCAAATTGG
CAAAAGGGCCGACCGGGTTCTGCGCAAGCTCAAAATCGCCCGTTATTTCAACTTGGAGATTGCTCCAGGGCGGTTCGCTTGGTCCCGTAAGCAGGCTGTT
ATCGATCAGGAAACAGCCCTGGACGGAATCTATGTGGTCCGCACCAACCTTCCCGAAAAGGAGATCTCCAGTGCCGACACGATCCGCCAATACAAATCAT
TGGCCCAGGTAGAGAGCGCCTTCAGACATTTGAAGAGCAGTCTGGATATCCGACCGATCTTTCATTTCCGTGCCGATCGCATCAAAGCCCACGTCTTCCT
GTGCATGTTGGCCTACATGGTAGAACGGAAAATGCGGATCAAGTTAAAAACGCTACTGTTCACCGATGAAGCGCCATTGCTCCCCGACGATCCTGTCATG
CCCAGAGAGTCATCGCCAAACGCCAAAGAGAAAACCGGCACAAGACGCTCTCCGGTAGGCCATGCCTTGCAGAGTTTCAGCACCCTGCTGGAGCAATTGG
CCACCTTGACCCGTAATACTGTTCGTGCCCAATGGGAGCCCGCGACTGGTAAACCGTTTGAGATGCTTGCTAACATCACCCCCCTACAGCAGGAGGCCTT
CCGGCTACTCAGCACCTCGCCTTAATGTGTCCAGTGACGCGCACCGTTTTCAAGTAAATCACAGCTTAATATCAATGCTTTATACGCTTTTTAAGCAGAA
AGTCCGG
TAATATTTGAATTTTTCTGCTATAATCATAGCCATGCATATTGAACGTGTTCCCAATCGAAATTCACACCCAACCGTGCTGCTGCGGGAATCCTACCGTG
AAAACGGTAAGGTCAAAAAGCGCACCCTGGGTAACTTGACTGGTCAACCCGAGGAGACCATTGAGGCTTTGCGTGTGGTGCTCAAGGGTGGACGCATGAT
GCCGATGACCTCAGCCCTGACCATTGAGGCCAGTCTGCCTCATGGCCATGTCGCTGCTGTCGTCGGAGTGATAAAATCCCTGGGCCTTAAAAGTTTGCTG
GGAACAAAACAAACGCGCTACCGCAATTTAATCCTGGCGCTGATTGCCCAGAGAGTGCTTCAACCTGCATCAAAACTGGCCTCGCACCGGCTGTTCAACA
CGACCACCTTGGGGCAGGAGTTCGGCGTGGCTGACGCCAACAAGGAAGAACTTTACAAAGCCCTCGATTGGCTCGGAGCGCAACAGGAACGCATGGAGAA
TCGCTTGGTGAAACAGCACCTTAAGGATGGCTCCATGGTACTGTTTGATCTCACTTCCACCTATCTGGAAGGAAGACAGTGTGAACTGGCTGAGTACGGC
TACAGCCGCGACCACCGCCCAGACAAACTCCAGATTGAGATTGGCCTGCTGTGCGACAAGGAGGGTCGCCCTCTGGCCGTGGAGGTGTTTCCCGGCAATA
CAGGCGATCCCACTACGCTGACCGCCCAAGTGAACAAGCTCAAGGCGCGCTTTGGCCTCAAACAGGTCATAGTTGTTGGTGATCGGGGTATGATCACCCA
GGCCCGGATTGACGAAGATCTCCAACCTGCTGGTTTTTCATGGATTACCGCCTTGCGCCACAGCACCATCCGATCACTGGCCAAAGCAGACAACTGGCCT
TCTTTATTCGATGCGCGCAACTTTGCCGAGATCACCTCCCCAGATTTCCCAGGTGAGCGACTGATGGTCTGCCGCAATCCCTTCCTGGCCGAGGATCAGG
GGCGATCACGACGGGAACTGTTGACCATCGCAGAACAGGGGTTGGAGACGATCCTGCAAGCCGTGCAAGAGGGCTCTTTGCGTGATTGTGGTCAAATTGG
CAAAAGGGCCGACCGGGTTCTGCGCAAGCTCAAAATCGCCCGTTATTTCAACTTGGAGATTGCTCCAGGGCGGTTCGCTTGGTCCCGTAAGCAGGCTGTT
ATCGATCAGGAAACAGCCCTGGACGGAATCTATGTGGTCCGCACCAACCTTCCCGAAAAGGAGATCTCCAGTGCCGACACGATCCGCCAATACAAATCAT
TGGCCCAGGTAGAGAGCGCCTTCAGACATTTGAAGAGCAGTCTGGATATCCGACCGATCTTTCATTTCCGTGCCGATCGCATCAAAGCCCACGTCTTCCT
GTGCATGTTGGCCTACATGGTAGAACGGAAAATGCGGATCAAGTTAAAAACGCTACTGTTCACCGATGAAGCGCCATTGCTCCCCGACGATCCTGTCATG
CCCAGAGAGTCATCGCCAAACGCCAAAGAGAAAACCGGCACAAGACGCTCTCCGGTAGGCCATGCCTTGCAGAGTTTCAGCACCCTGCTGGAGCAATTGG
CCACCTTGACCCGTAATACTGTTCGTGCCCAATGGGAGCCCGCGACTGGTAAACCGTTTGAGATGCTTGCTAACATCACCCCCCTACAGCAGGAGGCCTT
CCGGCTACTCAGCACCTCGCCTTAATGTGTCCAGTGACGCGCACCGTTTTCAAGTAAATCACAGCTTAATATCAATGCTTTATACGCTTTTTAAGCAGAA
AGTCCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1689 bp | 563 aa | 134 | 1822 | + | No |
Chemistry : DDE
ORF sequence :
MHIERVPNRNSHPTVLLRESYRENGKVKKRTLGNLTGQPEETIEALRVVLKGGRMMPMTSALTIEASLPHGHVAAVVGVIKSLGLKSLLGTKQTRYRNLI
LALIAQRVLQPASKLASHRLFNTTTLGQEFGVADANKEELYKALDWLGAQQERMENRLVKQHLKDGSMVLFDLTSTYLEGRQCELAEYGYSRDHRPDKLQ
IEIGLLCDKEGRPLAVEVFPGNTGDPTTLTAQVNKLKARFGLKQVIVVGDRGMITQARIDEDLQPAGFSWITALRHSTIRSLAKADNWPSLFDARNFAEI
TSPDFPGERLMVCRNPFLAEDQGRSRRELLTIAEQGLETILQAVQEGSLRDCGQIGKRADRVLRKLKIARYFNLEIAPGRFAWSRKQAVIDQETALDGIY
VVRTNLPEKEISSADTIRQYKSLAQVESAFRHLKSSLDIRPIFHFRADRIKAHVFLCMLAYMVERKMRIKLKTLLFTDEAPLLPDDPVMPRESSPNAKEK
TGTRRSPVGHALQSFSTLLEQLATLTRNTVRAQWEPATGKPFEMLANITPLQQEAFRLLSTSP
LALIAQRVLQPASKLASHRLFNTTTLGQEFGVADANKEELYKALDWLGAQQERMENRLVKQHLKDGSMVLFDLTSTYLEGRQCELAEYGYSRDHRPDKLQ
IEIGLLCDKEGRPLAVEVFPGNTGDPTTLTAQVNKLKARFGLKQVIVVGDRGMITQARIDEDLQPAGFSWITALRHSTIRSLAKADNWPSLFDARNFAEI
TSPDFPGERLMVCRNPFLAEDQGRSRRELLTIAEQGLETILQAVQEGSLRDCGQIGKRADRVLRKLKIARYFNLEIAPGRFAWSRKQAVIDQETALDGIY
VVRTNLPEKEISSADTIRQYKSLAQVESAFRHLKSSLDIRPIFHFRADRIKAHVFLCMLAYMVERKMRIKLKTLLFTDEAPLLPDDPVMPRESSPNAKEK
TGTRRSPVGHALQSFSTLLEQLATLTRNTVRAQWEPATGKPFEMLANITPLQQEAFRLLSTSP
Blast result :
Comments
ISMasp1 is 61% aa similar to ISMyca1. ISMasp1 was found by screening completely sequenced genomes for sequences homologous to the IS10R transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-77-D(N3)-176-E(C1). Genome sequencing of Magnetococcus sp. MC-1 is currently in progress : Accession number NZ_AAAN00000000.
References
1]De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished
2]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P.(2006)Unpublished