ISMba8
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1646 bp
Ends
IR Length : 19/24
IRL : CTTGACTTTGTCACATTTCCTTTTCACATCAACCGTGAAGTCCTAATTTT
IRR : CTTGACATTGTCAGATTATCTCTTTTTTGGAGTTGTTACTACATATTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTATCTTTC | CTAT | ATACGGTTCA | 4 |
TCAGGATTTC | NTAA | TTAATAGATG | 4 |
DNA sequence
CTTGACTTTGTCACATTTCCTTTTCACATCAACCGTGAAGTCCTAATTTTTCCTCTATAAATTTGGTTTAGTGAAACAAATAACAGATGATTTTATCAAG
TCAAATAATATTTCTGTAGAAAAATACATTTCAGAGAAACATCTTGAATCCTATTTCCAAACGAAAACTCGTTGTGTTGTTTCAACCGGCATTGATTACC
TTAATGGTTTGTTTCTTCTCCCCTATAGGAAAAATATGAGAAAAATGGCAATCTATTGTTGTAAATGCTCTAACAACCAATCACTAAGCCATTTTATCTC
AACTTCTCCTTGGCGTCCTGCAGATCTCCTCAAATCTGTTCGAACATATGCCATTAAAACTATAGGCAAAAATGGTGTTCTTATACTTGACGAATCAAGC
ATAAAAAAATCTGGAAATAGTTCTGTTGGAGTTTCTCATCAGTATTGCGGCAACCTTGGAAAAAAGAATAATTGTCAGGTTGGTGTGTTCCTTGCTTATT
TTAAGAAACAGAAGAGAATGTTGATTGATGAGAGATTATATCTCCCACAAAAATGGATTAATGACAAGGCACGTTGTTTAAAGGCTAAAATTCCTCCTGA
GAAAATAAAGTTCCGAACCAAGCATGAGCTTGGCCTTGAAATGATTGATAACGCAATAGAGGAAGGTATTCCTTTTTCCTATGTTACAATGGATGGATTC
TACGGTGAAAATCCGGAGTTATTGACAGAACTTGAAAATAGAGGCTTAACTTTTGTTGCAGATGTAGCGGTCGATACTCTTGTTTATATTGAGGAACCAT
TAGTTGGGATTCCTGAAAAAAAGGGAACAAGAGGAAGAAAACCCACAATTTCTAAGGTTTTGAATACATTATCAACAAGAATTGATTCTCTTTCCAGTTC
AATTGATGGATGGAAACTTATCAAAGTTAGAAAAACGGAAAGAGGGTACAAAAAAGTCTATTTTAAGGCTATAAAAGTTTGGAGACGTCAAAATAAATTA
CCTTGTGAGAAGCCATTATGGCTTCTCATAAGTAAAGATGTAGAGTCTAATGACATTAAATATTCATTATGTAACGCTTCTGAGGATACTTCATTAGACG
AACTTGCAAAAATGCAGAGCTCAAGGTACTGGATTGAGAGAGCATTTCAAGATGCAAAAGTATATTGTGGAATGTCTGAATACATGGTGAGAAGCTGGAA
TGCATGGCATCACCATATGGCATTGGTTATGCTTGCGATGCTTATTCTGTTGTCGTACAAAATAAAATTTATGAAATTTCATAAGATTTCACTTCATGGT
GTCATTTTGATTATGAAATTCCATAATCCATTGAAGATATTAAATGCGGGAGAGCTTGCAAGAATATTAAATCATGATAATGAGATGAGAGACAGAGCAA
GAGCAAGTAGATTGAAAGGTTCTTGACAAAAAACATGAGTAGGATTTTACTGAATTTTCGTTCTGGTTACTGATAAGTATGCAATTTTGAAAGTGAAAAT
GAAGGACATTACAAATAATTACTGTATTGATCAAGGTGAATAATGAGAAAACAAAAATGTCGAGTCAAAAATATTCAAAATAGGGGAATCAATTGGAAAA
ATATGTAGTAACAACTCCAAAAAAGAGATAATCTGACAATGTCAAG
TCAAATAATATTTCTGTAGAAAAATACATTTCAGAGAAACATCTTGAATCCTATTTCCAAACGAAAACTCGTTGTGTTGTTTCAACCGGCATTGATTACC
TTAATGGTTTGTTTCTTCTCCCCTATAGGAAAAATATGAGAAAAATGGCAATCTATTGTTGTAAATGCTCTAACAACCAATCACTAAGCCATTTTATCTC
AACTTCTCCTTGGCGTCCTGCAGATCTCCTCAAATCTGTTCGAACATATGCCATTAAAACTATAGGCAAAAATGGTGTTCTTATACTTGACGAATCAAGC
ATAAAAAAATCTGGAAATAGTTCTGTTGGAGTTTCTCATCAGTATTGCGGCAACCTTGGAAAAAAGAATAATTGTCAGGTTGGTGTGTTCCTTGCTTATT
TTAAGAAACAGAAGAGAATGTTGATTGATGAGAGATTATATCTCCCACAAAAATGGATTAATGACAAGGCACGTTGTTTAAAGGCTAAAATTCCTCCTGA
GAAAATAAAGTTCCGAACCAAGCATGAGCTTGGCCTTGAAATGATTGATAACGCAATAGAGGAAGGTATTCCTTTTTCCTATGTTACAATGGATGGATTC
TACGGTGAAAATCCGGAGTTATTGACAGAACTTGAAAATAGAGGCTTAACTTTTGTTGCAGATGTAGCGGTCGATACTCTTGTTTATATTGAGGAACCAT
TAGTTGGGATTCCTGAAAAAAAGGGAACAAGAGGAAGAAAACCCACAATTTCTAAGGTTTTGAATACATTATCAACAAGAATTGATTCTCTTTCCAGTTC
AATTGATGGATGGAAACTTATCAAAGTTAGAAAAACGGAAAGAGGGTACAAAAAAGTCTATTTTAAGGCTATAAAAGTTTGGAGACGTCAAAATAAATTA
CCTTGTGAGAAGCCATTATGGCTTCTCATAAGTAAAGATGTAGAGTCTAATGACATTAAATATTCATTATGTAACGCTTCTGAGGATACTTCATTAGACG
AACTTGCAAAAATGCAGAGCTCAAGGTACTGGATTGAGAGAGCATTTCAAGATGCAAAAGTATATTGTGGAATGTCTGAATACATGGTGAGAAGCTGGAA
TGCATGGCATCACCATATGGCATTGGTTATGCTTGCGATGCTTATTCTGTTGTCGTACAAAATAAAATTTATGAAATTTCATAAGATTTCACTTCATGGT
GTCATTTTGATTATGAAATTCCATAATCCATTGAAGATATTAAATGCGGGAGAGCTTGCAAGAATATTAAATCATGATAATGAGATGAGAGACAGAGCAA
GAGCAAGTAGATTGAAAGGTTCTTGACAAAAAACATGAGTAGGATTTTACTGAATTTTCGTTCTGGTTACTGATAAGTATGCAATTTTGAAAGTGAAAAT
GAAGGACATTACAAATAATTACTGTATTGATCAAGGTGAATAATGAGAAAACAAAAATGTCGAGTCAAAAATATTCAAAATAGGGGAATCAATTGGAAAA
ATATGTAGTAACAACTCCAAAAAAGAGATAATCTGACAATGTCAAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1188 bp | 396 aa | 236 | 1423 | + | No |
Chemistry : DDE
ORF sequence :
MRKMAIYCCKCSNNQSLSHFISTSPWRPADLLKSVRTYAIKTIGKNGVLILDESSIKKSGNSSVGVSHQYCGNLGKKNNCQVGVFLAYFKKQKRMLIDER
LYLPQKWINDKARCLKAKIPPEKIKFRTKHELGLEMIDNAIEEGIPFSYVTMDGFYGENPELLTELENRGLTFVADVAVDTLVYIEEPLVGIPEKKGTRG
RKPTISKVLNTLSTRIDSLSSSIDGWKLIKVRKTERGYKKVYFKAIKVWRRQNKLPCEKPLWLLISKDVESNDIKYSLCNASEDTSLDELAKMQSSRYWI
ERAFQDAKVYCGMSEYMVRSWNAWHHHMALVMLAMLILLSYKIKFMKFHKISLHGVILIMKFHNPLKILNAGELARILNHDNEMRDRARASRLKGS
LYLPQKWINDKARCLKAKIPPEKIKFRTKHELGLEMIDNAIEEGIPFSYVTMDGFYGENPELLTELENRGLTFVADVAVDTLVYIEEPLVGIPEKKGTRG
RKPTISKVLNTLSTRIDSLSSSIDGWKLIKVRKTERGYKKVYFKAIKVWRRQNKLPCEKPLWLLISKDVESNDIKYSLCNASEDTSLDELAKMQSSRYWI
ERAFQDAKVYCGMSEYMVRSWNAWHHHMALVMLAMLILLSYKIKFMKFHKISLHGVILIMKFHNPLKILNAGELARILNHDNEMRDRARASRLKGS
Blast result :
Comments
ISMba8 is 46% aa similar to ISRso17. ISMba8 was found by screening completely sequenced genomes for sequences homologous to the IS701 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-100-D(N3)-147-E(C1). The copy number in Methanosarcina barkeri str. fusaro is 2.
References
1]De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2]Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P.(2005)Unpublished
2]Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P.(2005)Unpublished