ISMmg3
- Family IS4
- Group IS10
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Magnetospirillum magnetotacticum | Magnetospirillum magnetotacticum MS-1 |
DNA section
IS Length : 1189 bp
Ends
IR Length : 17/18
IRL : CTCACCACCCATCAAATTTCCTTGACCTGAAGAATCGACGTGTGATTCGA
IRR : CTCACCACCCATCAGATTCTCCAAACGGCCCAGAGTGGTGGCAGGCCCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCGTCTAT | CGGTGACCAC | GACTTGGGGA | 10 |
DNA sequence
CTCACCACCCATCAAATTTCCTTGACCTGAAGAATCGACGTGTGATTCGAAGAGTCCGCCGGATTTCATGGGGGCGGAGGAGCGATGAAGGGTGGGATCG
AAGTTATCGCGGAGACGATCTGCGAGGACATGCGTGTGCGGCTTCCCCGGCAGAACAAGAAGCAACGGGAAGGTCTGGCGCTTCTGGCTGCGACGATGCT
TGATGTTCGCAGCGCCAACCTGATGGACGTGGCGGCGTCGTTGCCTCGACAGGCCGAGCGGCTGGACATGCGTTACCAATGGATCAGCCGCGTGTTGGGC
AACGCGCTGATCGATGTCGACGAGGTGATGGCTCCTTACGTTCGGGACATTCTGGGGCGTCTGGTGGGAGACGGGCGGCGGTTGGTGTTGATCATCGACC
AGACCCAGGCGAACGAGGTGCAGCAGGCGGTCGTGGTGGCCGTCCGTGTCGGCGAACGATCTTTGCCCCTGGCGTGGCGGGTCAAGAAGACGCAAGGGGC
GATTGGTTTTGCCGAACAGCGCGAAGCCCTTGAGGTCGTGGCGGGGCTGTTGCCCGAGGGCGTGCGTCCGGTGCTGATGGGCGACCGGTTCTACGGCAGC
CCCGACCTGATTGCCTGGTGCCGGACGCAGAGCTGGGATTGGCGCTTGCGGCTGAAGCAGGATCTTCTGGTCTTCGAAGACGGCGGCGAAAGCACCTTGG
CCGAGTGCTTCGCGCGCGGCGAGCGCATGCTGACCGGCGTCGAGTTGACCGGGAAACGGGTGCCGACCAACGTCGCCATGGTTCATGAAGCGGGCCATCC
GGAGCCGTGGATTATTGCCTTGTCCGAAGCCCCGACCGTCCATCGCGCCTTCGATTACGGCCTGCGCTGGGGTATCGAGGCCATGTTCTCCGACTTCAAG
ACCAGGGGTTTCGGGCTGGAAGACAGCCATATTCAGCGCGCTGACCGGATGGATCGTCTCATCATGGTGATGGCGCTCGCCCTGTTCTGGGCGGTCTCCA
CTGGGATGTGGGCGGCCGTCCATGCGGCATCACCCGACGAAAAAAAGACAGGCCAAACCAGCCCAAGAACGTCATCCGAAGCATGATGTCGTTCTTCAAG
CGCGGCATCCGCCGTATCCAGACTTGCCTTCAGCGCCTATGGGGCCTGCCACCACTCTGGGCCGTTTGGAGAATCTGATGGGTGGTGAG
AAGTTATCGCGGAGACGATCTGCGAGGACATGCGTGTGCGGCTTCCCCGGCAGAACAAGAAGCAACGGGAAGGTCTGGCGCTTCTGGCTGCGACGATGCT
TGATGTTCGCAGCGCCAACCTGATGGACGTGGCGGCGTCGTTGCCTCGACAGGCCGAGCGGCTGGACATGCGTTACCAATGGATCAGCCGCGTGTTGGGC
AACGCGCTGATCGATGTCGACGAGGTGATGGCTCCTTACGTTCGGGACATTCTGGGGCGTCTGGTGGGAGACGGGCGGCGGTTGGTGTTGATCATCGACC
AGACCCAGGCGAACGAGGTGCAGCAGGCGGTCGTGGTGGCCGTCCGTGTCGGCGAACGATCTTTGCCCCTGGCGTGGCGGGTCAAGAAGACGCAAGGGGC
GATTGGTTTTGCCGAACAGCGCGAAGCCCTTGAGGTCGTGGCGGGGCTGTTGCCCGAGGGCGTGCGTCCGGTGCTGATGGGCGACCGGTTCTACGGCAGC
CCCGACCTGATTGCCTGGTGCCGGACGCAGAGCTGGGATTGGCGCTTGCGGCTGAAGCAGGATCTTCTGGTCTTCGAAGACGGCGGCGAAAGCACCTTGG
CCGAGTGCTTCGCGCGCGGCGAGCGCATGCTGACCGGCGTCGAGTTGACCGGGAAACGGGTGCCGACCAACGTCGCCATGGTTCATGAAGCGGGCCATCC
GGAGCCGTGGATTATTGCCTTGTCCGAAGCCCCGACCGTCCATCGCGCCTTCGATTACGGCCTGCGCTGGGGTATCGAGGCCATGTTCTCCGACTTCAAG
ACCAGGGGTTTCGGGCTGGAAGACAGCCATATTCAGCGCGCTGACCGGATGGATCGTCTCATCATGGTGATGGCGCTCGCCCTGTTCTGGGCGGTCTCCA
CTGGGATGTGGGCGGCCGTCCATGCGGCATCACCCGACGAAAAAAAGACAGGCCAAACCAGCCCAAGAACGTCATCCGAAGCATGATGTCGTTCTTCAAG
CGCGGCATCCGCCGTATCCAGACTTGCCTTCAGCGCCTATGGGGCCTGCCACCACTCTGGGCCGTTTGGAGAATCTGATGGGTGGTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
999 bp | 333 aa | 85 | 1083 | + | No |
Chemistry : DDE
ORF sequence :
MKGGIEVIAETICEDMRVRLPRQNKKQREGLALLAATMLDVRSANLMDVAASLPRQAERLDMRYQWISRVLGNALIDVDEVMAPYVRDILGRLVGDGRRL
VLIIDQTQANEVQQAVVVAVRVGERSLPLAWRVKKTQGAIGFAEQREALEVVAGLLPEGVRPVLMGDRFYGSPDLIAWCRTQSWDWRLRLKQDLLVFEDG
GESTLAECFARGERMLTGVELTGKRVPTNVAMVHEAGHPEPWIIALSEAPTVHRAFDYGLRWGIEAMFSDFKTRGFGLEDSHIQRADRMDRLIMVMALAL
FWAVSTGMWAAVHAASPDEKKTGQTSPRTSSEA
VLIIDQTQANEVQQAVVVAVRVGERSLPLAWRVKKTQGAIGFAEQREALEVVAGLLPEGVRPVLMGDRFYGSPDLIAWCRTQSWDWRLRLKQDLLVFEDG
GESTLAECFARGERMLTGVELTGKRVPTNVAMVHEAGHPEPWIIALSEAPTVHRAFDYGLRWGIEAMFSDFKTRGFGLEDSHIQRADRMDRLIMVMALAL
FWAVSTGMWAAVHAASPDEKKTGQTSPRTSSEA
Blast result :
Comments
ISMmg3 is 42% aa similar to IS1481.
ISMmg3 was found by screening completely sequenced genomes for sequences homologous to the IS10R transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-61-D(N3)-97-E(C1).
Genome in progress : Accession number : NZ_AAAP01003868.1
ISMmg3 was found by screening completely sequenced genomes for sequences homologous to the IS10R transposase using BLASTP. Multiple alignments revealed a conserved DDE motif : D(N2)-61-D(N3)-97-E(C1).
Genome in progress : Accession number : NZ_AAAP01003868.1
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] NCBI Microbial Genomes Annotation Project(2006)Unpublished
2] NCBI Microbial Genomes Annotation Project(2006)Unpublished