ISMasp2
- Family IS4
- Group ISPepr1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Magnetococcus sp. | Magnetococcus sp. MC-1 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 20
IRL : CTCAAGTTTCGCAGTTCGTTGACCGATCAATTGGACTGATATTTGCCAAC
IRR : CTCAAGTTTCGCAGTTCGTTTCGGCCAGAATTTGACGTTGTGAACCAAGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATAAAAGTG | TTCCATGTGT | 0 |
DNA sequence
CTCAAGTTTCGCAGTTCGTTGACCGATCAATTGGACTGATATTTGCCAACCAAGTCAAGGGCAAAGCTGCCTCGTGTATGCTATAATTCTGGTGTCGAAT
CAGTCAGATAGCTCAGGGACGAGGCCAGCTTCATGAATCAGCATAACAGGGAACAGGCTACTGTGCCTACCCCCATGATTGACGAGATCAAAACCCAATC
CTTTGGAGTATTCGGCGTAGATAACGCTATCGTCGATTTTCTCCAGGAAATTGGCTTCCAGGCGATATTCAATCGGCGCGGATGGAGCAAACGAACGGGG
AAGGATCTTCCGACGCTGATCATGTTACTGATCCTGCATCCTCTGTTGAAGGTGCCATCCATTCACCTTTTTTGCCGCGACCACTTTCTGTCGGTCTTCG
CGGTAGGCAAGGATACCTTCTACCGGTTGCTCCAACGCCAATTTCCATGGCGGAATGCGCATTGGGCGCTAATCAAAAAGTTACTACCCCAGTGGCGAAC
GCTGGATCTCGGCCCCGGCTACCTTGTTGCCGATACCACCGTCAAAGAGAAGCGTGGTGATCGTATTGAAGGTGTTTGCTGGCATCATGACCACAATACC
GGCCGCTCAGTTGCAGGTTTTGAAGCAGCCCACTTGGTCTGGGTTAACAAGCAGGGAACCTTGCCACTGGATGCCGCTTTGCGTTTTTCAAAGCGGCCTC
TGATCAGCAATCTGCTCCACATCCTCAGTTACCGGTTCGATTGTCGCTCACATCTTGGACGGCGTTACCGTGAGGCGGCCAAGATGTCTAAGCTTGATCA
GACTGTCGACATGGTTGCCAGAGCCATTCAAGCTGGGATTCCGGCCCAGTATTTTCTCGCCGATGCTTGGTACTCATCGGTTAAGTTCGTCAAGAAAATC
CTGGATCTGGGCGTGGTCCCCCTGATCCGATGGAAGCGCAACAACACCAAGTTCCTATTCCAGGGCGAGAGACTGACCAGTGCCGAACTTTACACCCGGT
TTGCCAAGGGCAAGATCAGGAAAGCTAAGGGGTCCAAGCGCTTCAAAGGAACCTTCCTAGATGCAGAGCACCCCGAAATCGGCCTTATACGTCTGTTCTT
CGTCCGGCTGATCGATCCGAAAACCGGCTCGAAGGAGTGGGCCGTCTTTCTGACCACAGACCGGTCAATGGGGCTGTCAAATATGATCGAGCACTACGCC
AACCGCTGGGGAATCGAAGTTTTCTACAAGGAATCCAAACAGCACCTTGGTTTCCTTAATGAATCCGTCCGATCCTTCGAAGCAGTCATCGCCTGCCTAC
ACCTAGCTGCCATGCGCCATGCTGTTCTCTCCAGCATGGTGGCGATCAAAGGCAGCCAGCGGGATCAACTCGCCCACAATCTGGCCGCTTTGACCTATGC
CCGAAAGCTCTGGCATACCTTCCGCGCCATCTTCAATGATGCCCTTGGCCGAACATCCATTCTTGAAAATCACCAAAAAAACGAGGTAATTGAACTCTTT
GAACAGGAGGTCGAGGCTTGGCTCAGCAAGGCATTGATGCTCGATCCCCTTGGTTCACAACGTCAAATTCTGGCCGAAACGAACTGCGAAACTTGAG
CAGTCAGATAGCTCAGGGACGAGGCCAGCTTCATGAATCAGCATAACAGGGAACAGGCTACTGTGCCTACCCCCATGATTGACGAGATCAAAACCCAATC
CTTTGGAGTATTCGGCGTAGATAACGCTATCGTCGATTTTCTCCAGGAAATTGGCTTCCAGGCGATATTCAATCGGCGCGGATGGAGCAAACGAACGGGG
AAGGATCTTCCGACGCTGATCATGTTACTGATCCTGCATCCTCTGTTGAAGGTGCCATCCATTCACCTTTTTTGCCGCGACCACTTTCTGTCGGTCTTCG
CGGTAGGCAAGGATACCTTCTACCGGTTGCTCCAACGCCAATTTCCATGGCGGAATGCGCATTGGGCGCTAATCAAAAAGTTACTACCCCAGTGGCGAAC
GCTGGATCTCGGCCCCGGCTACCTTGTTGCCGATACCACCGTCAAAGAGAAGCGTGGTGATCGTATTGAAGGTGTTTGCTGGCATCATGACCACAATACC
GGCCGCTCAGTTGCAGGTTTTGAAGCAGCCCACTTGGTCTGGGTTAACAAGCAGGGAACCTTGCCACTGGATGCCGCTTTGCGTTTTTCAAAGCGGCCTC
TGATCAGCAATCTGCTCCACATCCTCAGTTACCGGTTCGATTGTCGCTCACATCTTGGACGGCGTTACCGTGAGGCGGCCAAGATGTCTAAGCTTGATCA
GACTGTCGACATGGTTGCCAGAGCCATTCAAGCTGGGATTCCGGCCCAGTATTTTCTCGCCGATGCTTGGTACTCATCGGTTAAGTTCGTCAAGAAAATC
CTGGATCTGGGCGTGGTCCCCCTGATCCGATGGAAGCGCAACAACACCAAGTTCCTATTCCAGGGCGAGAGACTGACCAGTGCCGAACTTTACACCCGGT
TTGCCAAGGGCAAGATCAGGAAAGCTAAGGGGTCCAAGCGCTTCAAAGGAACCTTCCTAGATGCAGAGCACCCCGAAATCGGCCTTATACGTCTGTTCTT
CGTCCGGCTGATCGATCCGAAAACCGGCTCGAAGGAGTGGGCCGTCTTTCTGACCACAGACCGGTCAATGGGGCTGTCAAATATGATCGAGCACTACGCC
AACCGCTGGGGAATCGAAGTTTTCTACAAGGAATCCAAACAGCACCTTGGTTTCCTTAATGAATCCGTCCGATCCTTCGAAGCAGTCATCGCCTGCCTAC
ACCTAGCTGCCATGCGCCATGCTGTTCTCTCCAGCATGGTGGCGATCAAAGGCAGCCAGCGGGATCAACTCGCCCACAATCTGGCCGCTTTGACCTATGC
CCGAAAGCTCTGGCATACCTTCCGCGCCATCTTCAATGATGCCCTTGGCCGAACATCCATTCTTGAAAATCACCAAAAAAACGAGGTAATTGAACTCTTT
GAACAGGAGGTCGAGGCTTGGCTCAGCAAGGCATTGATGCTCGATCCCCTTGGTTCACAACGTCAAATTCTGGCCGAAACGAACTGCGAAACTTGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1461 bp | 487 aa | 133 | 1593 | + | No |
Chemistry : DDE
ORF sequence :
MNQHNREQATVPTPMIDEIKTQSFGVFGVDNAIVDFLQEIGFQAIFNRRGWSKRTGKDLPTLIMLLILHPLLKVPSIHLFCRDHFLSVFAVGKDTFYRLL
QRQFPWRNAHWALIKKLLPQWRTLDLGPGYLVADTTVKEKRGDRIEGVCWHHDHNTGRSVAGFEAAHLVWVNKQGTLPLDAALRFSKRPLISNLLHILSY
RFDCRSHLGRRYREAAKMSKLDQTVDMVARAIQAGIPAQYFLADAWYSSVKFVKKILDLGVVPLIRWKRNNTKFLFQGERLTSAELYTRFAKGKIRKAKG
SKRFKGTFLDAEHPEIGLIRLFFVRLIDPKTGSKEWAVFLTTDRSMGLSNMIEHYANRWGIEVFYKESKQHLGFLNESVRSFEAVIACLHLAAMRHAVLS
SMVAIKGSQRDQLAHNLAALTYARKLWHTFRAIFNDALGRTSILENHQKNEVIELFEQEVEAWLSKALMLDPLGSQRQILAETNCET
QRQFPWRNAHWALIKKLLPQWRTLDLGPGYLVADTTVKEKRGDRIEGVCWHHDHNTGRSVAGFEAAHLVWVNKQGTLPLDAALRFSKRPLISNLLHILSY
RFDCRSHLGRRYREAAKMSKLDQTVDMVARAIQAGIPAQYFLADAWYSSVKFVKKILDLGVVPLIRWKRNNTKFLFQGERLTSAELYTRFAKGKIRKAKG
SKRFKGTFLDAEHPEIGLIRLFFVRLIDPKTGSKEWAVFLTTDRSMGLSNMIEHYANRWGIEVFYKESKQHLGFLNESVRSFEAVIACLHLAAMRHAVLS
SMVAIKGSQRDQLAHNLAALTYARKLWHTFRAIFNDALGRTSILENHQKNEVIELFEQEVEAWLSKALMLDPLGSQRQILAETNCET
Blast result :
Comments
ISMasp2 is 43% aa similar to ISGur1. ISMasp2 was found by screening completely sequenced genomes for sequences homologous to the ISGur1 transposase using BLASTP. Multiple sequence alignments revealed a conserved DDE motif : D(N2)-109-D(N3)-117-E(C1). The sequencing of the Magnetococcus sp. MC-1 chromosome is currently in progress. Accession: NZ_AAAN00000000.
References
1] De Palmenaer D, Siguier P, Mahillon J (2008) BMC Evol Biol , 8(1):18
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Unpublished
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,C., Glavina,T., Hammon,N., Israni,S., Pitluck,S. and Richardson,P. (2005) Unpublished