ISMysp2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000519 | ND | Mycobacterium sp. | Mycobacterium sp. KMS |
DNA section
IS Length : 1095 bp
Ends
IR Length : 25
IRL : ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGG
IRR : ACTGCTTATCCGCTTAAGTGGACCTGTGTCAGTCAGAACTCGCCATATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGGCTTTGATCGG | AAGCACGA | GCGATCCGAAGGCC | 8 |
DNA sequence
ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGGGCGCTCCTGTGGGTGGTGTGGACTATCCGCGGACCTATCAAGAATTCCGC
GCGTGGTTTCCCGACGACGCCTCATGTGCAGCGTATTTGGCCCGTCTGCGCTGGCCAGGCGGCTTTCGATGCCCCTCGTGTGATCACGATCGAGCATGGC
AAACCTCAACCCAGCACTGGAAGTGTGTGAGCTGCGGCCGGAAGACGTCGGTGACCGCGGGGACTATCTTCCATCGGACCCGCACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGGGCGTCAGCCAAGAACCTGCACGACATGCTCGGCCTGGGCTCGTATGAGACCGCGTGGGCC
TGGCTCCACAAGATGCGCCGGGCAATGGTGCGCCCCGACCGCGAGTTGCTCACCGAAGTCGTCGAAGTTGACGAGTCCTTCATCGGCGGCCGCGCCACTG
GCAAGAAAGGCGCCTCCACGAGTAAGGCCCCGGTGATGATTGCGGTGGAAAACATTGGCACGCAAGTAAATCGAAAACTTCGACTTGGCCGAGTGCGTCT
CGGCGTCGCAGACTCACCAGGGTCGAAACAACTCGTCGACTTCGCACGCACGACCGTTGAACCAGGCTCGGTGATCCGCACCGACGGCGCCCGAATGTTC
CGCGTCTTGGCAGGCGAAGGGTTCAAGCATGAGTACATCTCCGGCTACAGCTCACCGGAACCTGGGCACGTCACCCTACCGGGACCACACCGGGTGGCCT
CGCTACTGAAACGATGGAATGCCGGCACTCACCACTACCGAGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGACG
TCGGTCGACCGCCCGCGGCATGCTCTTCTACCGCCTGCTCCAGCAAAGCGTCAATACAGACCCGCATCCACTGAGCGAGCTAGTCAGCCGCACTTCAGAG
CCGTTCTCGCCCAACGACAATCCCACCGAATTCATCACCAGCGACACATATGGCGAGTTCTGACTGACACAGGTCCACTTAAGCGGATAAGCAGT
GCGTGGTTTCCCGACGACGCCTCATGTGCAGCGTATTTGGCCCGTCTGCGCTGGCCAGGCGGCTTTCGATGCCCCTCGTGTGATCACGATCGAGCATGGC
AAACCTCAACCCAGCACTGGAAGTGTGTGAGCTGCGGCCGGAAGACGTCGGTGACCGCGGGGACTATCTTCCATCGGACCCGCACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGGGCGTCAGCCAAGAACCTGCACGACATGCTCGGCCTGGGCTCGTATGAGACCGCGTGGGCC
TGGCTCCACAAGATGCGCCGGGCAATGGTGCGCCCCGACCGCGAGTTGCTCACCGAAGTCGTCGAAGTTGACGAGTCCTTCATCGGCGGCCGCGCCACTG
GCAAGAAAGGCGCCTCCACGAGTAAGGCCCCGGTGATGATTGCGGTGGAAAACATTGGCACGCAAGTAAATCGAAAACTTCGACTTGGCCGAGTGCGTCT
CGGCGTCGCAGACTCACCAGGGTCGAAACAACTCGTCGACTTCGCACGCACGACCGTTGAACCAGGCTCGGTGATCCGCACCGACGGCGCCCGAATGTTC
CGCGTCTTGGCAGGCGAAGGGTTCAAGCATGAGTACATCTCCGGCTACAGCTCACCGGAACCTGGGCACGTCACCCTACCGGGACCACACCGGGTGGCCT
CGCTACTGAAACGATGGAATGCCGGCACTCACCACTACCGAGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGACG
TCGGTCGACCGCCCGCGGCATGCTCTTCTACCGCCTGCTCCAGCAAAGCGTCAATACAGACCCGCATCCACTGAGCGAGCTAGTCAGCCGCACTTCAGAG
CCGTTCTCGCCCAACGACAATCCCACCGAATTCATCACCAGCGACACATATGGCGAGTTCTGACTGACACAGGTCCACTTAAGCGGATAAGCAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 59 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MGGVDYPRTYQEFRAWFPDDASCAAYLARLRWPGGFRCPSCDHDRAWQTSTQHWKCVSCGRKTSVTAGTIFHRTRTPLSTWFAAIWLVTSQKNGASAKNL
HDMLGLGSYETAWAWLHKMRRAMVRPDRELLTEVVEVDESFIGGRATGKKGASTSKAPVMIAVENIGTQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRVLAGEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSTARGMLFYRLLQQSVNT
DPHPLSELVSRTSEPFSPNDNPTEFITSDTYGEF
HDMLGLGSYETAWAWLHKMRRAMVRPDRELLTEVVEVDESFIGGRATGKKGASTSKAPVMIAVENIGTQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRVLAGEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSTARGMLFYRLLQQSVNT
DPHPLSELVSRTSEPFSPNDNPTEFITSDTYGEF
Blast result :
Comments
ISMysp2 is 96% aa similar to ISMva1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute (JGI-PGF)(20006) Direct submission Genbank.