ISMfl2
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009338 | ND | Mycobacterium flavescens | Mycobacterium gilvum PYR-GCK Mycobacterium flavescens PYR-GCK |
DNA section
IS Length : 1095 bp
Ends
IR Length : 25
IRL : ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGG
IRR : ACTGCTTATCCGCTTAAGTGGACCTGTGTCAGTCAGAACTCGCCATATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCGA | ACACATGT | TCGA | 8 |
DNA sequence
ACTGCTTATCCGCTTAAGTGGACCTAAGCTGGTCAGCATGGGTTTCGAGGGCGCTCCTGTGGGTGGTGTGGACTATCCGCGGACCTATCAAGAATTCCGC
GCGTGGTTTCCCGACGACGCCTCATGTGCAGCGTATTTGGCCCGTCTGCGCTGGCCAGGCGGCTTTCGATGCCCCTCGTGTGATCACGATCGAGCATGGC
AAACCTCAACCCAGCACTGGAAGTGTGTGAGCTGCGGCCGGAAGACGTCGGTGACCGCGGGGACTATCTTCCATCGGACCCGCACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGGGCGTCAGCCAAGAACCTGCACGACATGCTCGGCCTGGGCTCGTATGAGACCGCGTGGGCC
TGGCTCCACAAGATGCGCCGGGCAATGGTGCGCCCCGACCGCGAGTTGCTCACCGAAGTCGTCGAAGTTGACGAGTCCTTCATCGGCGGCCGCGCCACTG
GCAAGAAAGGCGCCTCCACGAGTAAGGCCCCGGTGATGATTGCGGTGGAAAACATTGGCACGCAAGTAAATCGAAAACTTCGACTTGGCCGAGTGCGTCT
CGGCGTCGCAGACTCACCAGGGTCGAAACAACTCGTCGACTTCGCACGCACGACCGTTGAACCAGGCTCGGTGATCCGCACCGACGGCGCCCGAATGTTC
CGCGTCTTGGCAGGCGAAGGGTTCAAGCATGAGTACATCTCCGGCTACAGCTCACCGGAACCTGGGCACGTCACCCTACCGGGACCACACCGGGTGGCCT
CGCTACTGAAACGATGGAATGCCGGCACTCACCACTACCGAGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGACG
TCGGTCGACCGCCCGCGGCATGCTCTTCTACCGCCTGCTCCAGCAAAGCGTCAATACAGACCCGCATCCACTGAGCGAGCTAGTCAGCCGCACTTCAGAG
CCGTTCTCGCCCAACGACAATCCCACCGAATTCATCACCAGCGACACATATGGCGAGTTCTGACTGACACAGGTCCACTTAAGCGGATAAGCAGT
GCGTGGTTTCCCGACGACGCCTCATGTGCAGCGTATTTGGCCCGTCTGCGCTGGCCAGGCGGCTTTCGATGCCCCTCGTGTGATCACGATCGAGCATGGC
AAACCTCAACCCAGCACTGGAAGTGTGTGAGCTGCGGCCGGAAGACGTCGGTGACCGCGGGGACTATCTTCCATCGGACCCGCACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGGGCGTCAGCCAAGAACCTGCACGACATGCTCGGCCTGGGCTCGTATGAGACCGCGTGGGCC
TGGCTCCACAAGATGCGCCGGGCAATGGTGCGCCCCGACCGCGAGTTGCTCACCGAAGTCGTCGAAGTTGACGAGTCCTTCATCGGCGGCCGCGCCACTG
GCAAGAAAGGCGCCTCCACGAGTAAGGCCCCGGTGATGATTGCGGTGGAAAACATTGGCACGCAAGTAAATCGAAAACTTCGACTTGGCCGAGTGCGTCT
CGGCGTCGCAGACTCACCAGGGTCGAAACAACTCGTCGACTTCGCACGCACGACCGTTGAACCAGGCTCGGTGATCCGCACCGACGGCGCCCGAATGTTC
CGCGTCTTGGCAGGCGAAGGGTTCAAGCATGAGTACATCTCCGGCTACAGCTCACCGGAACCTGGGCACGTCACCCTACCGGGACCACACCGGGTGGCCT
CGCTACTGAAACGATGGAATGCCGGCACTCACCACTACCGAGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAGTTCACCTTCCGGTTCAACCGACG
TCGGTCGACCGCCCGCGGCATGCTCTTCTACCGCCTGCTCCAGCAAAGCGTCAATACAGACCCGCATCCACTGAGCGAGCTAGTCAGCCGCACTTCAGAG
CCGTTCTCGCCCAACGACAATCCCACCGAATTCATCACCAGCGACACATATGGCGAGTTCTGACTGACACAGGTCCACTTAAGCGGATAAGCAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 59 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MGGVDYPRTYQEFRAWFPDDASCAAYLARLRWPGGFRCPSCDHDRAWQTSTQHWKCVSCGRKTSVTAGTIFHRTRTPLSTWFAAIWLVTSQKNGASAKNL
HDMLGLGSYETAWAWLHKMRRAMVRPDRELLTEVVEVDESFIGGRATGKKGASTSKAPVMIAVENIGTQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRVLAGEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSTARGMLFYRLLQQSVNT
DPHPLSELVSRTSEPFSPNDNPTEFITSDTYGEF
HDMLGLGSYETAWAWLHKMRRAMVRPDRELLTEVVEVDESFIGGRATGKKGASTSKAPVMIAVENIGTQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRVLAGEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSTARGMLFYRLLQQSVNT
DPHPLSELVSRTSEPFSPNDNPTEFITSDTYGEF
Blast result :
Comments
ISMfl2 is 96% aa similar to ISMva1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission Genbank.
del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission Genbank.