ISMha1
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY324982 | ND | Mannheimia haemolytica | Mannheimia haemolytica plasmid pGS2-53 |
DNA section
IS Length : 701 bp
Ends
IR Length : 19
IRL : GGGGCTGTAGTAGATTAGCATCACTGCTATACTACAAAAATGAAGATAAT
IRR : GGGGCTGTAGTAGATTAGCCCTAAATCTCACACCATTTTCGCAACGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCCATAATTA | AAAAATTT | TCATAAGGGAAA | 8 |
DNA sequence
GGGGCTGTAGTAGATTAGCATCACTGCTATACTACAAAAATGAAGATAATTTATTGTAAATTAAAGAAATCTTTGCAGAAAAAGCTTCTTGAATTTTTTG
TTGCTGAAGTGACCGCTAGAACCGCTGCTGATTTATTAGGTATTCAACCCAATACGGCAGCCCTGTTTTACCACAAAATTAGGCTGGTCATTGAACACCA
TTTAGCCCTTGAAGCTCATGAAATTTTTGAGGGAAAAATTGAGGTAGATGAAAGCTATTTTGCTGGTCATCGCAAAGGAAAACGAGGGCGACCTGCGGCT
GGGAAAGTCGCTGTATTCGGTTTGTTGAAGCGTCAAGGAAAGGTGTTTACAAAATGTACCAAATCAGAAACGCTAATGCCGGTTATTACAAGGAAAATCA
AGCCTGACAGCTGGGTTTATACGGATACCTATCGTAGCTATGATGCCCTTGATGTGAGCAATTTCATCCACGAGCGAATCAACCATTCCGAACTGTTTGC
GGAGAAACAAAACCATATCAATGGCATTGAAAATTTTTGGAATCAAGCGACAGTACTCCGAAAATATAACGGAATTAACCGAAAAAATTTCCCTTTATTC
TTGAAGGAATGTGAATTTCGGTTTAACTTTGGTACACCAAAAGAACAGCTCAAAACGTTGCGAAAATGGTGTGAGATTTAGGGCTAATCTACTACAGCCC
C
TTGCTGAAGTGACCGCTAGAACCGCTGCTGATTTATTAGGTATTCAACCCAATACGGCAGCCCTGTTTTACCACAAAATTAGGCTGGTCATTGAACACCA
TTTAGCCCTTGAAGCTCATGAAATTTTTGAGGGAAAAATTGAGGTAGATGAAAGCTATTTTGCTGGTCATCGCAAAGGAAAACGAGGGCGACCTGCGGCT
GGGAAAGTCGCTGTATTCGGTTTGTTGAAGCGTCAAGGAAAGGTGTTTACAAAATGTACCAAATCAGAAACGCTAATGCCGGTTATTACAAGGAAAATCA
AGCCTGACAGCTGGGTTTATACGGATACCTATCGTAGCTATGATGCCCTTGATGTGAGCAATTTCATCCACGAGCGAATCAACCATTCCGAACTGTTTGC
GGAGAAACAAAACCATATCAATGGCATTGAAAATTTTTGGAATCAAGCGACAGTACTCCGAAAATATAACGGAATTAACCGAAAAAATTTCCCTTTATTC
TTGAAGGAATGTGAATTTCGGTTTAACTTTGGTACACCAAAAGAACAGCTCAAAACGTTGCGAAAATGGTGTGAGATTTAGGGCTAATCTACTACAGCCC
C
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
642 bp | 213 aa | 40 | 681 | + | No |
Chemistry : DDE
ORF sequence :
MKIIYCKLKKSLQKKLLEFFVAEVTARTAADLLGIQPNTAALFYHKIRLVIEHHLALEAHEIFEGKIEVDESYFAGHRKGKRGRPAAGKVAVFGLLKRQG
KVFTKCTKSETLMPVITRKIKPDSWVYTDTYRSYDALDVSNFIHERINHSELFAEKQNHINGIENFWNQATVLRKYNGINRKNFPLFLKECEFRFNFGTP
KEQLKTLRKWCEI
KVFTKCTKSETLMPVITRKIKPDSWVYTDTYRSYDALDVSNFIHERINHSELFAEKQNHINGIENFWNQATVLRKYNGINRKNFPLFLKECEFRFNFGTP
KEQLKTLRKWCEI
Blast result :
Comments
ISMha1 is 80% aa similar to IS1016C.
References
1] Lo, R.Y. (2003) Direct submission GenBank.