ISMyma4

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Mycobacterium marinum
Mycobacterium marinum M
DNA section
IS Length : 1085 bp

Ends


IR Length : 26/30

IRL : TGTACCCGGACAGGACGTTGGTAGCAGGCGTGTTGGCTTGATGTGAGGAG
IRR : TGTACCCGGTCACCACGTTGGTTGCAGTCGGCTGATGGGCGGGAGGCCGC

Insertion site


Left flankDirect repeatRight flankDR Length
CTGGAACCCGCCTAGCGCGATCGACG6
CTCGGGGGCGGCTAGGCGTTACTTGC6
ACAACCACCGCCTAGCCGGATACCCG6
GCCGGGCTCGGCTAGCCGGCTGTGGC6

DNA sequence

TGTACCCGGACAGGACGTTGGTAGCAGGCGTGTTGGCTTGATGTGAGGAGAACCCCCGGGTGGGGTGTGGCTTGTCTAAGGTCCACCACCGTCCGGAGGT
TCTCGTGTCCCACCGTAATGCCCGCACGACGTTTCATGGCCGTCTGCTGATGGTGCAGCGTTATCGAGCTGGTTGGTTCAAGGCCCGCATCGCCGAGGCG
ATGGGCGTGTCGCGCAAGTGCGTCAGTACCTGGATTGGCCGTTTTGAGGCCGAAGGCATGGCGGGTCTGCTCGATCGGTCTTCGCGGCCGCACACGATGC
CTACCCGCACGTCAGCGGTGTTGGAGAATCAGATCGTGGCCTGGCGTCGGCGCCAGCGCTGCGGCCCAGAGGAGATCGCCGCGAAATTGGGGGTCAGCGC
CCGCACGGTCTCGCGCGTACTGCGCCGGCGAGGAATTCCCTACCTGCGTGATTGCGATCCGATGACCGGGGTTGTCATCCGGGCTTCCAAGACCACCGCC
GTGCGCTACGAACGGGCCCGGCCCGGCGAACTGGTGCACATGGACGTCAAAAAACTTGGCCGTATCCCCGTGGGCGGGGGCTGGCGCGCCCACGGCCGCG
GCCGCGGCCGCGGCGGGAACCGCAATCGCCGCCATGGCAGCGGTTTTGACTACGTCCACTCCCTAGTCGACGACCACTGCCGGTTGGCCTACTCCGAAAT
CCTGCCCGACGAGAAAGGCGCCACCTGCGCGGGATTTCTGCGCCGCGCCGCGGCCTACTTCGCCCGTCACGGCATCGCCGGCATCGAATGGGTCATGACC
GACAACGCCTGGGCCTACCGCTACTCGCTGGGCGCAGTCTGCACCGAAATCGGTGCCCAGCAGATCTTCATCAAGCCACACTGCCCCTGGCAAAACGGGA
AAGTCGAGCGCTTCAACCGCACCCTGCAGACCGAATGGGCCTACCGACAGGTCTTTACCTCCAACGCCCAACGCAACGCAGCCCTTGCGCCCTGGCTCAA
GCACTACAACACTCAACGACGCCACGGCGCACTCGGCGGCCTCCCGCCCATCAGCCGACTGCAACCAACGTGGTGACCGGGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa1051076+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSHRNARTTFHGRLLMVQRYRAGWFKARIAEAMGVSRKCVSTWIGRFEAEGMAGLLDRSSRPHTMPTRTSAVLENQIVAWRRRQRCGPEEIAAKLGVSAR
TVSRVLRRRGIPYLRDCDPMTGVVIRASKTTAVRYERARPGELVHMDVKKLGRIPVGGGWRAHGRGRGRGGNRNRRHGSGFDYVHSLVDDHCRLAYSEIL
PDEKGATCAGFLRRAAAYFARHGIAGIEWVMTDNAWAYRYSLGAVCTEIGAQQIFIKPHCPWQNGKVERFNRTLQTEWAYRQVFTSNAQRNAALAPWLKH
YNTQRRHGALGGLPPISRLQPTW

 

Blast result :
Comments
ISMyma4 is 70% aa similar to IS1122.
References
1] Stinear Tim. (2006) Direct submission.