ISMyma4
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Mycobacterium marinum | Mycobacterium marinum M |
DNA section
IS Length : 1085 bp
Ends
IR Length : 26/30
IRL : TGTACCCGGACAGGACGTTGGTAGCAGGCGTGTTGGCTTGATGTGAGGAG
IRR : TGTACCCGGTCACCACGTTGGTTGCAGTCGGCTGATGGGCGGGAGGCCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGGAACCCG | CCTAGC | GCGATCGACG | 6 |
CTCGGGGGCG | GCTAGG | CGTTACTTGC | 6 |
ACAACCACCG | CCTAGC | CGGATACCCG | 6 |
GCCGGGCTCG | GCTAGC | CGGCTGTGGC | 6 |
DNA sequence
TGTACCCGGACAGGACGTTGGTAGCAGGCGTGTTGGCTTGATGTGAGGAGAACCCCCGGGTGGGGTGTGGCTTGTCTAAGGTCCACCACCGTCCGGAGGT
TCTCGTGTCCCACCGTAATGCCCGCACGACGTTTCATGGCCGTCTGCTGATGGTGCAGCGTTATCGAGCTGGTTGGTTCAAGGCCCGCATCGCCGAGGCG
ATGGGCGTGTCGCGCAAGTGCGTCAGTACCTGGATTGGCCGTTTTGAGGCCGAAGGCATGGCGGGTCTGCTCGATCGGTCTTCGCGGCCGCACACGATGC
CTACCCGCACGTCAGCGGTGTTGGAGAATCAGATCGTGGCCTGGCGTCGGCGCCAGCGCTGCGGCCCAGAGGAGATCGCCGCGAAATTGGGGGTCAGCGC
CCGCACGGTCTCGCGCGTACTGCGCCGGCGAGGAATTCCCTACCTGCGTGATTGCGATCCGATGACCGGGGTTGTCATCCGGGCTTCCAAGACCACCGCC
GTGCGCTACGAACGGGCCCGGCCCGGCGAACTGGTGCACATGGACGTCAAAAAACTTGGCCGTATCCCCGTGGGCGGGGGCTGGCGCGCCCACGGCCGCG
GCCGCGGCCGCGGCGGGAACCGCAATCGCCGCCATGGCAGCGGTTTTGACTACGTCCACTCCCTAGTCGACGACCACTGCCGGTTGGCCTACTCCGAAAT
CCTGCCCGACGAGAAAGGCGCCACCTGCGCGGGATTTCTGCGCCGCGCCGCGGCCTACTTCGCCCGTCACGGCATCGCCGGCATCGAATGGGTCATGACC
GACAACGCCTGGGCCTACCGCTACTCGCTGGGCGCAGTCTGCACCGAAATCGGTGCCCAGCAGATCTTCATCAAGCCACACTGCCCCTGGCAAAACGGGA
AAGTCGAGCGCTTCAACCGCACCCTGCAGACCGAATGGGCCTACCGACAGGTCTTTACCTCCAACGCCCAACGCAACGCAGCCCTTGCGCCCTGGCTCAA
GCACTACAACACTCAACGACGCCACGGCGCACTCGGCGGCCTCCCGCCCATCAGCCGACTGCAACCAACGTGGTGACCGGGTACA
TCTCGTGTCCCACCGTAATGCCCGCACGACGTTTCATGGCCGTCTGCTGATGGTGCAGCGTTATCGAGCTGGTTGGTTCAAGGCCCGCATCGCCGAGGCG
ATGGGCGTGTCGCGCAAGTGCGTCAGTACCTGGATTGGCCGTTTTGAGGCCGAAGGCATGGCGGGTCTGCTCGATCGGTCTTCGCGGCCGCACACGATGC
CTACCCGCACGTCAGCGGTGTTGGAGAATCAGATCGTGGCCTGGCGTCGGCGCCAGCGCTGCGGCCCAGAGGAGATCGCCGCGAAATTGGGGGTCAGCGC
CCGCACGGTCTCGCGCGTACTGCGCCGGCGAGGAATTCCCTACCTGCGTGATTGCGATCCGATGACCGGGGTTGTCATCCGGGCTTCCAAGACCACCGCC
GTGCGCTACGAACGGGCCCGGCCCGGCGAACTGGTGCACATGGACGTCAAAAAACTTGGCCGTATCCCCGTGGGCGGGGGCTGGCGCGCCCACGGCCGCG
GCCGCGGCCGCGGCGGGAACCGCAATCGCCGCCATGGCAGCGGTTTTGACTACGTCCACTCCCTAGTCGACGACCACTGCCGGTTGGCCTACTCCGAAAT
CCTGCCCGACGAGAAAGGCGCCACCTGCGCGGGATTTCTGCGCCGCGCCGCGGCCTACTTCGCCCGTCACGGCATCGCCGGCATCGAATGGGTCATGACC
GACAACGCCTGGGCCTACCGCTACTCGCTGGGCGCAGTCTGCACCGAAATCGGTGCCCAGCAGATCTTCATCAAGCCACACTGCCCCTGGCAAAACGGGA
AAGTCGAGCGCTTCAACCGCACCCTGCAGACCGAATGGGCCTACCGACAGGTCTTTACCTCCAACGCCCAACGCAACGCAGCCCTTGCGCCCTGGCTCAA
GCACTACAACACTCAACGACGCCACGGCGCACTCGGCGGCCTCCCGCCCATCAGCCGACTGCAACCAACGTGGTGACCGGGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 105 | 1076 | + | No |
Chemistry : DDE
ORF sequence :
MSHRNARTTFHGRLLMVQRYRAGWFKARIAEAMGVSRKCVSTWIGRFEAEGMAGLLDRSSRPHTMPTRTSAVLENQIVAWRRRQRCGPEEIAAKLGVSAR
TVSRVLRRRGIPYLRDCDPMTGVVIRASKTTAVRYERARPGELVHMDVKKLGRIPVGGGWRAHGRGRGRGGNRNRRHGSGFDYVHSLVDDHCRLAYSEIL
PDEKGATCAGFLRRAAAYFARHGIAGIEWVMTDNAWAYRYSLGAVCTEIGAQQIFIKPHCPWQNGKVERFNRTLQTEWAYRQVFTSNAQRNAALAPWLKH
YNTQRRHGALGGLPPISRLQPTW
TVSRVLRRRGIPYLRDCDPMTGVVIRASKTTAVRYERARPGELVHMDVKKLGRIPVGGGWRAHGRGRGRGGNRNRRHGSGFDYVHSLVDDHCRLAYSEIL
PDEKGATCAGFLRRAAAYFARHGIAGIEWVMTDNAWAYRYSLGAVCTEIGAQQIFIKPHCPWQNGKVERFNRTLQTEWAYRQVFTSNAQRNAALAPWLKH
YNTQRRHGALGGLPPISRLQPTW
Blast result :
Comments
ISMyma4 is 70% aa similar to IS1122.
References
1] Stinear Tim. (2006) Direct submission.