ISMva1
- Family IS1595
- Group ISSod11
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008726 | ND | Mycobacterium vanbaalenii | Mycobacterium vanbaalenii PYR-1 |
DNA section
IS Length : 1093 bp
Ends
IR Length : 23/24
IRL : ACTGCTTATCTACTTAAGTGGACCTATGCTGGTCAGCATGGGTATCCAGG
IRR : ACTGCTTATCTGCTTAAGTGGACCGAGATGTCAGAATTCTCCGTGGGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCATTGCATCGA | ACATGTGT | TCGATTTTAAGC | 8 |
TGCGATAATCGA | ATGTATGT | TCGGTTCGGTGT | 8 |
CGCTAGAATCGA | ACGTATGT | TCGCATACGCGG | 8 |
GTCGGTGGTCGA | ATGTATGT | TCGAGCTATGTC | 8 |
ATCTATGCTCGA | ACATGTGT | TCGATGAGTCGG | 8 |
ACACTTCATCGA | ACATATGA | TCGAATCGTGGC | 8 |
CACCGCTGTCGA | AGGCATGT | TCGACCACCGAC | 8 |
DNA sequence
ACTGCTTATCTACTTAAGTGGACCTATGCTGGTCAGCATGGGTATCCAGGGCGCTCCCGTGGGTGGTGTGGACTATCCACGGACCTACCAGGAATTCCGG
GAGTGGTTCCCCGACGATGCCTCGTGCGCAGCGTATTTGGCCCGTTTGCGCTGGCCAGACGGCTTTCGATGTCCATCGTGCGACCACGATCGGGCGTGGC
AAACCTCGACCCGACACTGGAAATGCGTGAGCTGCGGCCGCAAGACCTCCGTCACGGCGGGCACCATTTTTCATCGCACCCGGACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGTGCATCAGCCAAGAATCTGCACGACATGCTCGGCTTGGGCTCTTACGAGACCGCCTGGGCG
TGGCTGCACAAACTGCGCCGGGCCATGGTGCGCCCTGACCGAGAATTGCTCAGCGACGTCGTTGAAGTCGACGAGTCTTTCGTCGGCGGCCGCGCCACCG
GCAAGCTAGGGGCCTCCACCAGCAAGGCGCCAGTCATGATTGCGGTGGAAAACCTTGGGCCGCAAGTGAATCGAAAGCTTCGGCTAGGCCGCGTCCGACT
CGGCGTGGCAGACTCTCCAGGCTCGAAACAGCTCGTCGACTTCGCCCGCACGACCGTCGAACCTGGCTCCGTCATCCGCACCGACGGCGCCCGCATGTTC
CGCACCCTGGCCAGCGAAGGCTTCAAACACGAGTACATCTCCGGTTACAGCTCACCAGAGCCCGGCCACGTCACCCTGCCGGGGCCACACCGGGTGGCCT
CATTGCTCAAGCGCTGGAACGCCGGCACTCATCACTACCGCGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAATTCACTTTCCGGTTCAACCGACG
CAGATCATCCGCCCGCGGCATGCTCTTCTACCGGCTGCTGCAGCAAAGCGTCAACACCGACCCTCACCCGCTGGCCGAACTGGTAAGCCGCACGTCAGAG
CTGTTCCCGCTCAACGACAATGCCGCCGAATTCGTGCCCAGCGACACCCACGGAGAATTCTGACATCTCGGTCCACTTAAGCAGATAAGCAGT
GAGTGGTTCCCCGACGATGCCTCGTGCGCAGCGTATTTGGCCCGTTTGCGCTGGCCAGACGGCTTTCGATGTCCATCGTGCGACCACGATCGGGCGTGGC
AAACCTCGACCCGACACTGGAAATGCGTGAGCTGCGGCCGCAAGACCTCCGTCACGGCGGGCACCATTTTTCATCGCACCCGGACCCCGTTGAGTACGTG
GTTCGCCGCCATCTGGTTGGTCACCTCGCAGAAGAACGGTGCATCAGCCAAGAATCTGCACGACATGCTCGGCTTGGGCTCTTACGAGACCGCCTGGGCG
TGGCTGCACAAACTGCGCCGGGCCATGGTGCGCCCTGACCGAGAATTGCTCAGCGACGTCGTTGAAGTCGACGAGTCTTTCGTCGGCGGCCGCGCCACCG
GCAAGCTAGGGGCCTCCACCAGCAAGGCGCCAGTCATGATTGCGGTGGAAAACCTTGGGCCGCAAGTGAATCGAAAGCTTCGGCTAGGCCGCGTCCGACT
CGGCGTGGCAGACTCTCCAGGCTCGAAACAGCTCGTCGACTTCGCCCGCACGACCGTCGAACCTGGCTCCGTCATCCGCACCGACGGCGCCCGCATGTTC
CGCACCCTGGCCAGCGAAGGCTTCAAACACGAGTACATCTCCGGTTACAGCTCACCAGAGCCCGGCCACGTCACCCTGCCGGGGCCACACCGGGTGGCCT
CATTGCTCAAGCGCTGGAACGCCGGCACTCATCACTACCGCGTCGAACGCGAGCACCTGCAGTACTACCTCGACGAATTCACTTTCCGGTTCAACCGACG
CAGATCATCCGCCCGCGGCATGCTCTTCTACCGGCTGCTGCAGCAAAGCGTCAACACCGACCCTCACCCGCTGGCCGAACTGGTAAGCCGCACGTCAGAG
CTGTTCCCGCTCAACGACAATGCCGCCGAATTCGTGCCCAGCGACACCCACGGAGAATTCTGACATCTCGGTCCACTTAAGCAGATAAGCAGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1005 bp | 334 aa | 59 | 1063 | + | No |
Chemistry : DDE
ORF sequence :
MGGVDYPRTYQEFREWFPDDASCAAYLARLRWPDGFRCPSCDHDRAWQTSTRHWKCVSCGRKTSVTAGTIFHRTRTPLSTWFAAIWLVTSQKNGASAKNL
HDMLGLGSYETAWAWLHKLRRAMVRPDRELLSDVVEVDESFVGGRATGKLGASTSKAPVMIAVENLGPQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRTLASEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSSARGMLFYRLLQQSVNT
DPHPLAELVSRTSELFPLNDNAAEFVPSDTHGEF
HDMLGLGSYETAWAWLHKLRRAMVRPDRELLSDVVEVDESFVGGRATGKLGASTSKAPVMIAVENLGPQVNRKLRLGRVRLGVADSPGSKQLVDFARTTV
EPGSVIRTDGARMFRTLASEGFKHEYISGYSSPEPGHVTLPGPHRVASLLKRWNAGTHHYRVEREHLQYYLDEFTFRFNRRRSSARGMLFYRLLQQSVNT
DPHPLAELVSRTSELFPLNDNAAEFVPSDTHGEF
Blast result :
Comments
ISMva1 is 96% aa similar to ISMysp2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2006) Direct submission GenBank.