ISMba20
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 1519 bp
Ends
Left end : AAAACGCACATGAAATTCTTCGAATAACAGGCACAAATAAATGAAAGTAGTTTACCCCACATTTTTTGACTATTGATCTCCTCATTACCTTGGGCAGTAA
Right end : GATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCTCATGTACTTTCATGCTAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AAAACGCACATGAAATTCTTCGAATAACAGGCACAAATAAATGAAAGTAGTTTACCCCACATTTTTTGACTATTGATCTCCTCATTACCTTGGGCAGTAA
GGTTGTCTTGTTTTTGGTTTATCAAAACCGTACTAAAACTAATCAGTGAATTGCCATCGAAGGCTCAAATGTGACTTTGATCATGGATGCTAAATTGGCC
TTTTAGGCAATTCCACTGCCCAAACCAAATTGGGTGATCTAATTTGATTGAAGTCATAAACAAAGCTTGTGGTCTAGATATTCACAAACTCTTTTTCATT
GCTACAATTCTCAGTCTATCTGGTGAAAAACAACAGCAACGTTTTAACAGAGATGATGAGGGAATTTTAGCCCTTAAAAAATGGGTAATCTCAGAAAAAT
GTAATGTTGTTGCATGTGAATCAACAAGTGATTTCTGGGTTCCGATTCATGATTCATTGATAAATTATCTACCTGTAATAGTTGGAAATGCACGAGATAT
GAAGGTATTTACTCATAAAAAAACAGATAAGATCGACTCAGAAGTCATTGCGCAACTTGCACTTAATAATATGATTCAGCCATCAAGAGTTTTCCCAAAG
GATCAGAGAGATTTTAGGTCATATGTTCGACTTCGGTTAACACTTGTACAAAAAAGAACAGATATAAAAAATAAAGCTCACTCAATTCTTGCATCTGAAA
TGTTAAACCTGAAGAATGCACTGACAGACATTTTTGGCAAGAATGGCAGAATGATCTTATCAGGAATCTCTTCAGGTAAGAGTGTTGACCAGATTATAGC
AAGCCTCTCTCCAAATGTTCGGAAAAAAGCTGCTCAGATAAGAGAAATTCTTGATCGAGAAATCTCTCAAAGTGCTGCATTCAGACTTCAGATCTGTCTG
AAACTCATAAAGAGTCTTGATGATGAGATCGAAGCTTTAGAAAAAGAAATTTTCAATTATGCTTATCAAAAGCATAAAAGAGAAATGGAGATTTTAATGT
CAGTTCCTGGCATAGGAGAACTTGGTGCTGCAACTCTACTTGCTGAGATAGGCAACTTTAAGGATTTTTCTTCTGGAAATAAGCTTGCTTCCTGGCTTGG
TCTGGTTCCTAATGTGTATCAATCTGCAGATAAATACCACAACGGAAGAATCACAAAGAGAGGATCGAAAACAGCAAGATGGATTCTGACGCAGATTTCT
CAGGCAGCAGCAAGAACGAAAAATAGCAAGTTAAAAGAGTTTTTTAACAGAAAAAAGAAGTCAATTGGACATTCCAAGGCAATAATTGCCTTGGCAAGGA
AAATTGCAACGATAATATGGCATCTTATCGTAAACGATGAGATGTACGAAGATGAAACTGGATATAAAAAGGGAGAAACTCAAAAGAGGAAGATTGTCGA
GACCGAGATATTTTCCGTTGATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCT
CATGTACTTTCATGCTAAA
GGTTGTCTTGTTTTTGGTTTATCAAAACCGTACTAAAACTAATCAGTGAATTGCCATCGAAGGCTCAAATGTGACTTTGATCATGGATGCTAAATTGGCC
TTTTAGGCAATTCCACTGCCCAAACCAAATTGGGTGATCTAATTTGATTGAAGTCATAAACAAAGCTTGTGGTCTAGATATTCACAAACTCTTTTTCATT
GCTACAATTCTCAGTCTATCTGGTGAAAAACAACAGCAACGTTTTAACAGAGATGATGAGGGAATTTTAGCCCTTAAAAAATGGGTAATCTCAGAAAAAT
GTAATGTTGTTGCATGTGAATCAACAAGTGATTTCTGGGTTCCGATTCATGATTCATTGATAAATTATCTACCTGTAATAGTTGGAAATGCACGAGATAT
GAAGGTATTTACTCATAAAAAAACAGATAAGATCGACTCAGAAGTCATTGCGCAACTTGCACTTAATAATATGATTCAGCCATCAAGAGTTTTCCCAAAG
GATCAGAGAGATTTTAGGTCATATGTTCGACTTCGGTTAACACTTGTACAAAAAAGAACAGATATAAAAAATAAAGCTCACTCAATTCTTGCATCTGAAA
TGTTAAACCTGAAGAATGCACTGACAGACATTTTTGGCAAGAATGGCAGAATGATCTTATCAGGAATCTCTTCAGGTAAGAGTGTTGACCAGATTATAGC
AAGCCTCTCTCCAAATGTTCGGAAAAAAGCTGCTCAGATAAGAGAAATTCTTGATCGAGAAATCTCTCAAAGTGCTGCATTCAGACTTCAGATCTGTCTG
AAACTCATAAAGAGTCTTGATGATGAGATCGAAGCTTTAGAAAAAGAAATTTTCAATTATGCTTATCAAAAGCATAAAAGAGAAATGGAGATTTTAATGT
CAGTTCCTGGCATAGGAGAACTTGGTGCTGCAACTCTACTTGCTGAGATAGGCAACTTTAAGGATTTTTCTTCTGGAAATAAGCTTGCTTCCTGGCTTGG
TCTGGTTCCTAATGTGTATCAATCTGCAGATAAATACCACAACGGAAGAATCACAAAGAGAGGATCGAAAACAGCAAGATGGATTCTGACGCAGATTTCT
CAGGCAGCAGCAAGAACGAAAAATAGCAAGTTAAAAGAGTTTTTTAACAGAAAAAAGAAGTCAATTGGACATTCCAAGGCAATAATTGCCTTGGCAAGGA
AAATTGCAACGATAATATGGCATCTTATCGTAAACGATGAGATGTACGAAGATGAAACTGGATATAAAAAGGGAGAAACTCAAAAGAGGAAGATTGTCGA
GACCGAGATATTTTCCGTTGATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCT
CATGTACTTTCATGCTAAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 244 | 1488 | + | No |
Chemistry : DEDD
ORF sequence :
MIEVINKACGLDIHKLFFIATILSLSGEKQQQRFNRDDEGILALKKWVISEKCNVVACESTSDFWVPIHDSLINYLPVIVGNARDMKVFTHKKTDKIDSE
VIAQLALNNMIQPSRVFPKDQRDFRSYVRLRLTLVQKRTDIKNKAHSILASEMLNLKNALTDIFGKNGRMILSGISSGKSVDQIIASLSPNVRKKAAQIR
EILDREISQSAAFRLQICLKLIKSLDDEIEALEKEIFNYAYQKHKREMEILMSVPGIGELGAATLLAEIGNFKDFSSGNKLASWLGLVPNVYQSADKYHN
GRITKRGSKTARWILTQISQAAARTKNSKLKEFFNRKKKSIGHSKAIIALARKIATIIWHLIVNDEMYEDETGYKKGETQKRKIVETEIFSVDERIKIMS
EIFAITEKQNEEST
VIAQLALNNMIQPSRVFPKDQRDFRSYVRLRLTLVQKRTDIKNKAHSILASEMLNLKNALTDIFGKNGRMILSGISSGKSVDQIIASLSPNVRKKAAQIR
EILDREISQSAAFRLQICLKLIKSLDDEIEALEKEIFNYAYQKHKREMEILMSVPGIGELGAATLLAEIGNFKDFSSGNKLASWLGLVPNVYQSADKYHN
GRITKRGSKTARWILTQISQAAARTKNSKLKEFFNRKKKSIGHSKAIIALARKIATIIWHLIVNDEMYEDETGYKKGETQKRKIVETEIFSVDERIKIMS
EIFAITEKQNEEST
Blast result :
Comments
ISMba20 is 93% aa similar to ISMba7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank