ISMba7
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri |
DNA section
IS Length : 1522 bp
Ends
Left end : AAAACGCACATGATATTCTTTGAATAACACGCTCAAATCAATGAAAGTCCTTTTAACTTACCTTTTTTGTTTATGTGCTCCATCATTCTCTTAGGACAGT
Right end : GATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTTCCTCATGTACTTTCATGCTAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
AAAACGCACATGATATTCTTTGAATAACACGCTCAAATCAATGAAAGTCCTTTTAACTTACCTTTTTTGTTTATGTGCTCCATCATTCTCTTAGGACAGT
AAGGTTGTCTTCTCTTTGGTTCTTCGAAGCCGTGAAAAAACTAATCGTTGAATTGCCATCGAAGGCTCAAATGTGACCTTGATCACGGATGCCAAATTGC
CTTTGAGGCAATTCCACTGTCCATGGAAATGATGGGGTAATATAAATTGGAAGGGGAAATAAACAAAGCTTGTGGTATAGACATTCACAAAATTTTTGTC
ATTGCTACTATTCTCAGCAGATCTGGGGAAAAACAGCTACAGCGTTTTGAGAGAGATGATGAGGGAATTTTATCCCTTAAAAATTGGGTAACATCAGAAA
AATGTGATGTTGTTGCTTGTGAATCAACAAGTGACTTCTGGGTTCCAATCTATGAATCATTGATAGATCATCTGCCTGTTATAGTTGGAAATGCTCGAGA
TATGAAAGCATTTACACACAAAAAAACAGATAAGATAGATTCAGAATTCATTGCACAACTTGCATTGAATAATATGATTCAGCCATCAAGAGTTTTCCCA
AAGAGGCACAGAGAATTCAGGTCATATGTTCGGCTCAGGTTAACTCTTGTAAGGAAAAGAACAGATATAAAAAATGAAGCTCATGCAATTCTATCTTCTG
AAATGCTACGTCTAGGTGACGTACTGACAGACATTTTTGGAAAAAATGGTAGAGCAATTCTGTCAGGAATTGCTTCAGGTAAAAATGTTGATCAGATTAT
AGAAAGCCTTTCTCCAAATGTTCGGAAAAAAACTGCTCAGATAAGAGAGATTCTGGACAGAGAAATCTCTCAGAGTGCTGCAATCAGACTTCAGATCTGT
CTAAATCTCATAAAACATCTGGATGATGAAATTGAAACTCTGGAAAGAGAAATTTTCAATTATGCTTATCAAAAGCATAAAAGAGAAATGGAAATTTTAA
TGTCAGTTCCAGGTATTGGAGAACTTGGTGCAGCAACTCTTATTGCTGAAATAGGAAATTTTAGTGATTTTCCATCGGGAGATAAACTTGCTTCATGGCT
TGGAATAGTTCCGAATGTGTATCAATCTGCAGATAAATACCACAACGGTAGAATCACTAAAAGAGGATCAAAAGTAGTAAGATGGATTCTAACCCAGATT
GCTCAAGCAGCAGCAAGAAAGAAAAATAGCAGGTTAAAAGAGTTTTTTAACAGGAAAAAGAAGTCAATTGGATATGCCAAGGCAATTATTGCCTTGGCAA
AGAAAATTGCAACGATAATATGGCATCTTATCATAAATGATGAGATGTATGAAGATGAGACCGGGTACGAAAAAGGAGAAGTTAAAAAGAGGAAGATTGT
TGAGACCGAGATATTTTCCGTTGATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTT
CCTCATGTACTTTCATGCTAAA
AAGGTTGTCTTCTCTTTGGTTCTTCGAAGCCGTGAAAAAACTAATCGTTGAATTGCCATCGAAGGCTCAAATGTGACCTTGATCACGGATGCCAAATTGC
CTTTGAGGCAATTCCACTGTCCATGGAAATGATGGGGTAATATAAATTGGAAGGGGAAATAAACAAAGCTTGTGGTATAGACATTCACAAAATTTTTGTC
ATTGCTACTATTCTCAGCAGATCTGGGGAAAAACAGCTACAGCGTTTTGAGAGAGATGATGAGGGAATTTTATCCCTTAAAAATTGGGTAACATCAGAAA
AATGTGATGTTGTTGCTTGTGAATCAACAAGTGACTTCTGGGTTCCAATCTATGAATCATTGATAGATCATCTGCCTGTTATAGTTGGAAATGCTCGAGA
TATGAAAGCATTTACACACAAAAAAACAGATAAGATAGATTCAGAATTCATTGCACAACTTGCATTGAATAATATGATTCAGCCATCAAGAGTTTTCCCA
AAGAGGCACAGAGAATTCAGGTCATATGTTCGGCTCAGGTTAACTCTTGTAAGGAAAAGAACAGATATAAAAAATGAAGCTCATGCAATTCTATCTTCTG
AAATGCTACGTCTAGGTGACGTACTGACAGACATTTTTGGAAAAAATGGTAGAGCAATTCTGTCAGGAATTGCTTCAGGTAAAAATGTTGATCAGATTAT
AGAAAGCCTTTCTCCAAATGTTCGGAAAAAAACTGCTCAGATAAGAGAGATTCTGGACAGAGAAATCTCTCAGAGTGCTGCAATCAGACTTCAGATCTGT
CTAAATCTCATAAAACATCTGGATGATGAAATTGAAACTCTGGAAAGAGAAATTTTCAATTATGCTTATCAAAAGCATAAAAGAGAAATGGAAATTTTAA
TGTCAGTTCCAGGTATTGGAGAACTTGGTGCAGCAACTCTTATTGCTGAAATAGGAAATTTTAGTGATTTTCCATCGGGAGATAAACTTGCTTCATGGCT
TGGAATAGTTCCGAATGTGTATCAATCTGCAGATAAATACCACAACGGTAGAATCACTAAAAGAGGATCAAAAGTAGTAAGATGGATTCTAACCCAGATT
GCTCAAGCAGCAGCAAGAAAGAAAAATAGCAGGTTAAAAGAGTTTTTTAACAGGAAAAAGAAGTCAATTGGATATGCCAAGGCAATTATTGCCTTGGCAA
AGAAAATTGCAACGATAATATGGCATCTTATCATAAATGATGAGATGTATGAAGATGAGACCGGGTACGAAAAAGGAGAAGTTAAAAAGAGGAAGATTGT
TGAGACCGAGATATTTTCCGTTGATGAACGAATAAAAATAATGAGTGAAATATTTGCAATAACGGAAAAACAGAATGAAGAGAGCACGTGAGGAAGATTT
CCTCATGTACTTTCATGCTAAA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 247 | 1491 | + | No |
Chemistry : DEDD
ORF sequence :
MEGEINKACGIDIHKIFVIATILSRSGEKQLQRFERDDEGILSLKNWVTSEKCDVVACESTSDFWVPIYESLIDHLPVIVGNARDMKAFTHKKTDKIDSE
FIAQLALNNMIQPSRVFPKRHREFRSYVRLRLTLVRKRTDIKNEAHAILSSEMLRLGDVLTDIFGKNGRAILSGIASGKNVDQIIESLSPNVRKKTAQIR
EILDREISQSAAIRLQICLNLIKHLDDEIETLEREIFNYAYQKHKREMEILMSVPGIGELGAATLIAEIGNFSDFPSGDKLASWLGIVPNVYQSADKYHN
GRITKRGSKVVRWILTQIAQAAARKKNSRLKEFFNRKKKSIGYAKAIIALAKKIATIIWHLIINDEMYEDETGYEKGEVKKRKIVETEIFSVDERIKIMS
EIFAITEKQNEEST
FIAQLALNNMIQPSRVFPKRHREFRSYVRLRLTLVRKRTDIKNEAHAILSSEMLRLGDVLTDIFGKNGRAILSGIASGKNVDQIIESLSPNVRKKTAQIR
EILDREISQSAAIRLQICLNLIKHLDDEIETLEREIFNYAYQKHKREMEILMSVPGIGELGAATLIAEIGNFSDFPSGDKLASWLGIVPNVYQSADKYHN
GRITKRGSKVVRWILTQIAQAAARKKNSRLKEFFNRKKKSIGYAKAIIALAKKIATIIWHLIINDEMYEDETGYEKGEVKKRKIVETEIFSVDERIKIMS
EIFAITEKQNEEST
Blast result :
Comments
ISMba7 is 94% aa similar to ISMma5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank