ISMba18
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 622 bp
Ends
Left end : TTCATTCGAATACCCCGCTAGCTTGCTGCGGGGATGGAAAACTTCCCCGAGAACCGTTGTTAAATAACTACCTTATATTTTTAGCTACATTTGTACTGTA II struct. : Yes
Right end : AACAAATGAAAATAATCGATTTTCAATAAGCCAATACAACCGAGCGGTGGCGCGAACATACCCCGTTGCTTGCAGCGGGGTGCGCCAGCGCAACTTTGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
AAAAGATAAAATGGA | TTAT | AGTTTCAGATTTTTTGGACT | tgat |
GGATAGGCTCGATCT | TTAT | TTTTGAGCATTATTTTTGAG | tgat |
ATATATTTTTTTTAT | TTAT | TGCGAAATTTAAAATCAGGT | tgat |
AAAATTTTTTTGATT | TGAT | TTTCAAGCATGAGGGCCTCA | tgat |
DNA sequence
TTCATTCGAATACCCCGCTAGCTTGCTGCGGGGATGGAAAACTTCCCCGAGAACCGTTGTTAAATAACTACCTTATATTTTTAGCTACATTTGTACTGTA
AATGGAACTCAGACATGCAAACCATTGTGTCTATAAAATAAGATACCACATGGTTTTTTGTATGAAATATCGGAAAAAGCTTCTTTTAGATGCTGAAATC
ATTCGTTTTTTGAAAACCATATGCTTTGGAATTGGTGAAAGGTACTGTTTTGAGTTTGATGCAATTGGTACTGATGGTGATCATGTCCATCTTTTTGTTG
GTGCCGAACCAAAATATTCTCCTTCAAGAGTAATGCAAATAATAAAAAGCATTACAGCAAGACAAATTTTTAAGCAATACCCTGAGATCAAAAAACAGCT
TTGGGGTAGTGAACTGTGGAGTGATGGAGGATACATCGGAACCGTAGGAGATGGAACAACTTCCGATGTAATAAAAAGCTATATTGAAAATCAGGGAAAT
CAGGAAGAAAAAGAAGCATACAAACAAATGAAAATAATCGATTTTCAATAAGCCAATACAACCGAGCGGTGGCGCGAACATACCCCGTTGCTTGCAGCGG
GGTGCGCCAGCGCAACTTTGAT
AATGGAACTCAGACATGCAAACCATTGTGTCTATAAAATAAGATACCACATGGTTTTTTGTATGAAATATCGGAAAAAGCTTCTTTTAGATGCTGAAATC
ATTCGTTTTTTGAAAACCATATGCTTTGGAATTGGTGAAAGGTACTGTTTTGAGTTTGATGCAATTGGTACTGATGGTGATCATGTCCATCTTTTTGTTG
GTGCCGAACCAAAATATTCTCCTTCAAGAGTAATGCAAATAATAAAAAGCATTACAGCAAGACAAATTTTTAAGCAATACCCTGAGATCAAAAAACAGCT
TTGGGGTAGTGAACTGTGGAGTGATGGAGGATACATCGGAACCGTAGGAGATGGAACAACTTCCGATGTAATAAAAAGCTATATTGAAAATCAGGGAAAT
CAGGAAGAAAAAGAAGCATACAAACAAATGAAAATAATCGATTTTCAATAAGCCAATACAACCGAGCGGTGGCGCGAACATACCCCGTTGCTTGCAGCGG
GGTGCGCCAGCGCAACTTTGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
450 bp | 149 aa | 102 | 551 | + | No |
Chemistry : Y1
ORF sequence :
MELRHANHCVYKIRYHMVFCMKYRKKLLLDAEIIRFLKTICFGIGERYCFEFDAIGTDGDHVHLFVGAEPKYSPSRVMQIIKSITARQIFKQYPEIKKQL
WGSELWSDGGYIGTVGDGTTSDVIKSYIENQGNQEEKEAYKQMKIIDFQ
WGSELWSDGGYIGTVGDGTTSDVIKSYIENQGNQEEKEAYKQMKIIDFQ
Blast result :
Comments
ISMba18 is 54% aa similar to ISMba16.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank