ISMba17

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007355 ND Methanosarcina barkeri
Methanosarcina barkeri fusaro
DNA section
IS Length : 1705 bp

Ends


Left end : ATGAATAAGCGTAAAACCCCTAAGTCTTTAGCTTAGGGGATATAAGCGTCAACTTCAACCCTGATTTCGTATATAATATTCTACCGCCTCTTTACTAACA II struct. : Yes
Right end : TAACACCTGCGGAACGCGGGGAAGAGCTTGGGGACTTGCCCTCAATAGAGGGAGGAATGAACCAAGAAGACACTCAGTCTTTAGATGAGTGGTAGTTCAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATAACGGGTTTTATAAATAGAGTATCAC

DNA sequence

ATGAATAAGCGTAAAACCCCTAAGTCTTTAGCTTAGGGGATATAAGCGTCAACTTCAACCCTGATTTCGTATATAATATTCTACCGCCTCTTTACTAACA
TTTCCGATTGTAGACGCAAAATATCCCTCACTCCATAACGTATTTTCACCCCAATAATACTTTTCCAGATATTCTTTTTGTGTTTTCCATAACCTGTTCG
TAGATTCTTGTTTCAATTTTCTGACAATTGACAAAACACTGACTTTAGGCTCGCTCTTAATCAGGAAATGTATATGGTCTTTGTCTGTTTCCATTTCAAG
AATTTCAAAATTTGACTCTTTTGAAATGTCATACATAATTTGTTTAAGTTCTTCGCTAATCGGTTCAAGTGCGACTTTTCGGTATTTGCAAACAAAGATA
ATATGATACATTAACAAAAACTTGCTATGATTCCTTGTCTCGCATTTCTTATTTACCAAAAACTCTATATATTGTTAAAGAGTATACTACTCTGTATGAT
GAAAGCGTTCAAATTTAGACTCTATCCTACACCTACGCAGTCTGTTCAATTGAATCAGCATATAGGTAGCTGTAGATTTGTCTACAATTGGGCGTTGGAT
CAAAAAATTAAAACTTACGAACAAACAGGAAAATCAATTTCCAGATTTGACTTAAACAAAAAGCTTCCCGTCTTGAAAGCTTCTAATGAATGGTTAGGAG
AAGTCAATTCTCAATCATTGCAGGGAATGACTAAGCAGGTTGAGTCTGCCTTCACTCGATTTTTCCGAGAGAAGAACGGCTTTCCTAAGTTCAAATCTAA
GAAAAACCCAATTCAATCTTTTCCTGTACCTCAACACTACTCCGTAGACTTTGAAAACAACACAGTTAAGCTCCCTAAAATAGAACCAATTAAAGCAGTT
TTTCACAGGAAGTTTGAGGGCGAGCTTAAAACAGCTACTGTTTCAAGGACATGTAAAGGACATTACTACATTAGTATCCTTGTTGAAGATGGGAACGAAC
TTCCTACAAAACAGAAGTATTCAGAATCTACTACAGTGGGTCTAGATGTCGGGATTAAAGATTTTGCTATACTTTCCACAGGAGAAACGATTGAGAATCC
TAACTACCTGAAAAACTCTTTGAACAGGTTAAAGGTTCTTCAAAAAAGAGTATCAAGGAAACAGAACGGTTCTAAGAACAGGGTAAAAGCCAAACATAGG
CTTGCTGTACTACATGACAAAATAACTAATCAGAGGAACGACTTCCAGAACAAACTCTCTTTTAAACTCATAAGCGAAAACCAAGCAATAGCTCTGGAAA
CTCTGAATGTTAAAGGAATGGTCAAGAATCATCATTTGGCACAGGCTATAAGTGATTCCGCATGGAGCAGTTTTGTAACAAAACTAGAGTATAAAACTGA
ATGGTACGGAAAAACCATCCTGAGAATTGGGCAATTTGAATCATCTTCTAAAGTATGTCATGTTTGTGGATATCATAATTCATATTTGACATTAAAAGAT
AGAGAATGGACTTGCCCAGACTGTAAAACAAAACATGATAGAGATATAAATGCCGCTATCAATATCAAGAAATTTGCTCTCATAGATCAAAATCGAATTG
GATTATAACACCTGCGGAACGCGGGGAAGAGCTTGGGGACTTGCCCTCAATAGAGGGAGGAATGAACCAAGAAGACACTCAGTCTTTAGATGAGTGGTAG
TTCAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
405 bp134 aa55459-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MVNKKCETRNHSKFLLMYHIIFVCKYRKVALEPISEELKQIMYDISKESNFEILEMETDKDHIHFLIKSEPKVSVLSIVRKLKQESTNRLWKTQKEYLEK
YYWGENTLWSEGYFASTIGNVSKEAVEYYIRNQG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1113 bp370 aa4961608+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MMKAFKFRLYPTPTQSVQLNQHIGSCRFVYNWALDQKIKTYEQTGKSISRFDLNKKLPVLKASNEWLGEVNSQSLQGMTKQVESAFTRFFREKNGFPKFK
SKKNPIQSFPVPQHYSVDFENNTVKLPKIEPIKAVFHRKFEGELKTATVSRTCKGHYYISILVEDGNELPTKQKYSESTTVGLDVGIKDFAILSTGETIE
NPNYLKNSLNRLKVLQKRVSRKQNGSKNRVKAKHRLAVLHDKITNQRNDFQNKLSFKLISENQAIALETLNVKGMVKNHHLAQAISDSAWSSFVTKLEYK
TEWYGKTILRIGQFESSSKVCHVCGYHNSYLTLKDREWTCPDCKTKHDRDINAAINIKKFALIDQNRIGL

 

Blast result :
Comments
ISMba17 is 92%(ORF A) and 93% (ORF B) aa similar to ISMac7.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank