ISMba16
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007355 | ND | Methanosarcina barkeri | Methanosarcina barkeri fusaro |
DNA section
IS Length : 722 bp
Ends
Left end : TACTATGGGAGCGCAGAGGGTCACGAATACCCTGACCTTTAGGTCGGGGATGAAGTGAACCCTCGCTGGCTGTTTTATATTCGCATAACTGTTTCAATCA II struct. : Yes
Right end : GGCAACGTAGAATTAATGAGTTCTAAGTACCAAAATAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTGGGGTGGCCGCACGCAATTTGAT II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TGCTTTTATGTAATT | TTAT | TTGGGCTACAATTAGTATTTCA | tgat |
AAAGCTTATAGCTGT | TTAT | TTTAATTCAAATTTAACTTTTT | tgat |
DNA sequence
TACTATGGGAGCGCAGAGGGTCACGAATACCCTGACCTTTAGGTCGGGGATGAAGTGAACCCTCGCTGGCTGTTTTATATTCGCATAACTGTTTCAATCA
TCAGTTCTTTGTAAAATAAAGTTTTTTTTGGCACCATAACCACAGGTGGTGCCAGCCACCTATGGCTAGGATGTGATATAATGTTGGAACTACGTAGTTT
TAGCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTACCTAAATATCGATACAGTATATTCTACAACAAGCGGATTAAAAAGGATTGCGAGTTG
ATTCTCAGCAGTATTTGCATGGAAAAAGGCTACAAAATTCATGCAATGGAAGTTGTAGATGATCATGTTCACTTGTTTCTAGAGTTTCATCCAAGTACTT
CTCTATCAGAGGTAATTCAATACTTGAAAGGAGGAAGTTCTTACAGACTTTTCAAGCTTCATCCTGAAATGAGACACCAGTATTGGAGTGGAAGTCTATG
GTCAAGTGGAAAGTTCTATCGATCTGTTGGGAATGTAACTGCTGACACAATCAAGCATTATATTAAGGAATCGCAGGGAAAAACGAAAACAGAAGCTCAA
TCACAGAGGTTAAAAAAATCCGGGCAACGTAGAATTAATGAGTTCTAAGTACCAAAATAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTG
GGGTGGCCGCACGCAATTTGAT
TCAGTTCTTTGTAAAATAAAGTTTTTTTTGGCACCATAACCACAGGTGGTGCCAGCCACCTATGGCTAGGATGTGATATAATGTTGGAACTACGTAGTTT
TAGCCATGGCTATGGTCAGATTACCTACCACATCGTGTTGGTACCTAAATATCGATACAGTATATTCTACAACAAGCGGATTAAAAAGGATTGCGAGTTG
ATTCTCAGCAGTATTTGCATGGAAAAAGGCTACAAAATTCATGCAATGGAAGTTGTAGATGATCATGTTCACTTGTTTCTAGAGTTTCATCCAAGTACTT
CTCTATCAGAGGTAATTCAATACTTGAAAGGAGGAAGTTCTTACAGACTTTTCAAGCTTCATCCTGAAATGAGACACCAGTATTGGAGTGGAAGTCTATG
GTCAAGTGGAAAGTTCTATCGATCTGTTGGGAATGTAACTGCTGACACAATCAAGCATTATATTAAGGAATCGCAGGGAAAAACGAAAACAGAAGCTCAA
TCACAGAGGTTAAAAAAATCCGGGCAACGTAGAATTAATGAGTTCTAAGTACCAAAATAACCGGGCGGGCGGCCCGAAGCATACCCCATCCTTTAGGGTG
GGGTGGCCGCACGCAATTTGAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
468 bp | 155 aa | 181 | 648 | + | No |
Chemistry : Y1
ORF sequence :
MLELRSFSHGYGQITYHIVLVPKYRYSIFYNKRIKKDCELILSSICMEKGYKIHAMEVVDDHVHLFLEFHPSTSLSEVIQYLKGGSSYRLFKLHPEMRHQ
YWSGSLWSSGKFYRSVGNVTADTIKHYIKESQGKTKTEAQSQRLKKSGQRRINEF
YWSGSLWSSGKFYRSVGNVTADTIKHYIKESQGKTKTEAQSQRLKKSGQRRINEF
Blast result :
Comments
ISMba16 is 55% aa similar to ISEnfa200.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Goodwin,L.A., Saunders,E.H., Schmutz,J., Larimer,F., Land,M., Anderson,I. and Richardson,P. (2005) Direct submission GenBank